Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0839 ATGGAAGGGAAAGCCAAGGACAAGGTGGACTTTGACTTGGGTTGCGGTTTGGTGGGGAGAATTTTCCACCTCAAAACCAATTACAGGACCAGAAAATCCTCTGTTCATTCACTGCCCATGAAGCCTTGCAACACTGCACAACAGAGAGACCAGGCCATAAACGACTTCAAACCCCATCTAAACCATCAACCAAAGTTTCCACGAGATACTGCCAACGGAATTACACTCAAAGGAGAGCAGAATCCTACCAGAAAGAGTACCTCTAGTCACCAGGCACCTTCTGCATGCCGAAACATTCCAAATGGGAGACCCTCCGACGCTGCAAGAACCTCAGTTCAACAAAACCATGACCCAAATGACGAGAGTAAGCAACAGAAAGAGAACTCTGGTAATTCTCTGGAACTTGCAAGGATAAGCACAGGTGCCAGTCATCATCAGAACAACGAGACCAAATCCCCAGCCAAAGATTTTGTGTTACCGATCACTGGGAATTTGCTTGTGAATAACAGCCCCAGAACTAGTGTTACCAAGAGCAAGGAGTTGAACTCCATGTCTAGTTACAGTAGTAACGGCAACAAAGGTGTGATGGGGAATATCATGAGGAAGAACAGTGATGAACTTGCGCAATTTCGGAGTCCAAGGAACGGCAGAGCGGACCCTGAGGTGATGAAGTCCATGGGGAATGAAGCCTACAAGCTCGGAAGATTTCAAGAAGCTTTGGTTTTGTATGACAGAGCCATTACTCTTGACTCCAATAAGGCAACGTATCACTGCAATAAGAGCGCAGCTTTGATCGGTTTGGGAAGGTTTCTGCAGGCAATTGCTGAGTGCGAGGAAGCTATCAGGTTGGAGCCTTCTTATAGCAGAGCCCACAACCGTTTGGCAACAATTTATTTCAGACTTGGAGAAGCAGAAAAGGCGCTGAATTGCAATGAAACAAGCCCATGTGTTGATTCCGTTTTCAGTTTACAAGTTCAAAATCTTCAAAATCACCTTAGCAAATGCACTGAAGCTCGGAAAGTCAAAGACTGGAAAGGTATATTGAAGGAAACACAGGCTGCAGTATCTTTAGGAGCCGATTCAGCTCCAGAGGTCTATTGTTTACAAACTGAAGCCTTGCTGAAGCTCCAAAGACATCAAGAGGCATACGCTACCTTCGAGAAAATGCCAAAATTTGACCTTGATAGTTGTAAGAAAATATTCGGTCCAGCTCGTAGTGCTTACCTCATGATGATAGCTGCTCAAATTTACTTGGAAGCCGGCAGGTTTGAGGATGCTGTAACAACATCTGAGAAAGCAGCTAAACTAGATCCAAGTAGCTTTGAGGTGAATGCAGTGGTGAGGAGAGCCAGAGCAGTGACATCAGCCAGAATGAGTGGTAACTTACTCTTCAAGGCATCAAAATTCACGGAAGCATGCGCTGTGTACAATGAAGGACTAGAGCATGATCCTTACAACTCAGTTCTGCTATGCAATAGGGCAGCATGTCGTTCCAAGCTAGGTCAATTTGAGAAAGCAATTGAAGATTGCAACGTGGCACTTATACTTCAGCCTAGCTATAGCAAGGCGAGGTTGAGGAGGGCAGATTGCAATGCCAAGTTGGAACGGTGGGAAGCTGCGATTCAAGACTATGAAATGCTATTAAGAGAAAAACCAGGGGATGAGGAGGTGGCCAGAGCTCTGTTTGAGACTCAGCTTCAACTCAAGGTGCTGCGCGGAGAAGATATTAAGGACTTGAAATTTGGTTCAAATTTGTTTTTCATCTCAAGCAATGATCGGTTTAGACATTACGTAACATCACCAGGGATGTCTGTGGTGCTGTTTTGCAACAAGGCAACCCACAAACAAGTGTTGTTGGTGTTGGAGCAAACCTGCAAGAGATTTCCGTCAGTTAATTTTCTTAAGGTGGAGATTGAAGACCACCCCTACTTGGCAAAATCAGAAGGTGTGAACTGCATCCCTGCCTTTAAAATATACAAGAATGGATCAAGGGTGAAAGAAATTCCAGGCAACAACCACGAGTTGTTAGAAAAATTAGTTAAATTATACAGCAGTTGA 2058 0.4466 MEGKAKDKVDFDLGCGLVGRIFHLKTNYRTRKSSVHSLPMKPCNTAQQRDQAINDFKPHLNHQPKFPRDTANGITLKGEQNPTRKSTSSHQAPSACRNIPNGRPSDAARTSVQQNHDPNDESKQQKENSGNSLELARISTGASHHQNNETKSPAKDFVLPITGNLLVNNSPRTSVTKSKELNSMSSYSSNGNKGVMGNIMRKNSDELAQFRSPRNGRADPEVMKSMGNEAYKLGRFQEALVLYDRAITLDSNKATYHCNKSAALIGLGRFLQAIAECEEAIRLEPSYSRAHNRLATIYFRLGEAEKALNCNETSPCVDSVFSLQVQNLQNHLSKCTEARKVKDWKGILKETQAAVSLGADSAPEVYCLQTEALLKLQRHQEAYATFEKMPKFDLDSCKKIFGPARSAYLMMIAAQIYLEAGRFEDAVTTSEKAAKLDPSSFEVNAVVRRARAVTSARMSGNLLFKASKFTEACAVYNEGLEHDPYNSVLLCNRAACRSKLGQFEKAIEDCNVALILQPSYSKARLRRADCNAKLERWEAAIQDYEMLLREKPGDEEVARALFETQLQLKVLRGEDIKDLKFGSNLFFISSNDRFRHYVTSPGMSVVLFCNKATHKQVLLVLEQTCKRFPSVNFLKVEIEDHPYLAKSEGVNCIPAFKIYKNGSRVKEIPGNNHELLEKLVKLYSS* 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0839 685 ProSiteProfiles TPR repeat profile. 407 440 IPR019734 GO:0005515
Vra5g0839 685 SUPERFAMILY TPR-like 458 569 IPR011990 GO:0005515
Vra5g0839 685 MobiDBLite consensus disorder prediction 74 118 - -
Vra5g0839 685 Pfam Tetratricopeptide repeat 476 508 - -
Vra5g0839 685 Pfam Tetratricopeptide repeat 263 308 - -
Vra5g0839 685 PANTHER 43KDA POSTSYNAPTIC PROTEIN-RELATED 1 684 - -
Vra5g0839 685 ProSiteProfiles TPR repeat profile. 220 253 IPR019734 GO:0005515
Vra5g0839 685 CDD TRX_family 594 679 - -
Vra5g0839 685 Pfam TPR repeat 227 262 - -
Vra5g0839 685 Pfam Thioredoxin 617 678 IPR013766 -
Vra5g0839 685 MobiDBLite consensus disorder prediction 175 196 - -
Vra5g0839 685 Gene3D Glutaredoxin 582 684 - -
Vra5g0839 685 SMART tpr_5 220 253 IPR019734 GO:0005515
Vra5g0839 685 SMART tpr_5 363 396 IPR019734 GO:0005515
Vra5g0839 685 SMART tpr_5 288 321 IPR019734 GO:0005515
Vra5g0839 685 SMART tpr_5 453 486 IPR019734 GO:0005515
Vra5g0839 685 SMART tpr_5 521 554 IPR019734 GO:0005515
Vra5g0839 685 SMART tpr_5 407 440 IPR019734 GO:0005515
Vra5g0839 685 SMART tpr_5 254 287 IPR019734 GO:0005515
Vra5g0839 685 SMART tpr_5 487 520 IPR019734 GO:0005515
Vra5g0839 685 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 1 684 IPR044534 -
Vra5g0839 685 SUPERFAMILY TPR-like 219 442 IPR011990 GO:0005515
Vra5g0839 685 Pfam Tetratricopeptide repeat 411 439 IPR019734 GO:0005515
Vra5g0839 685 Gene3D Tetratricopeptide repeat domain 218 572 IPR011990 GO:0005515
Vra5g0839 685 SUPERFAMILY Thioredoxin-like 576 681 IPR036249 -
Vra5g0839 685 Coils Coil 527 547 - -
Vra5g0839 685 MobiDBLite consensus disorder prediction 57 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0839 Vra-Chr5 14178417 14182256 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0839 K09527 - gmx:100814381 1130.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0839 5 14178417 14182256 Vra5g0839 5 14178417 14182256 ECH
Vra6g1002 6 12929847 12933205 Vra5g0839 5 14178417 14182256 PCT