Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0995 ATGGCTCTCCCTCCCTCTTCAGTTCCCACTACATTCTTCATCATCTCTCTCCTTCTAACTCTCCTCCTCGCCGAGTCAACTCAGCCTCCTCATTCCTGCGACTCCTCCTCCAACTCACCCTACTATGCATTCTGCAACACCAAGCTTCCCATCCCCCAGAGAGCAAAAGACCTGGTCTCGAGACTCACCCTCGACGAGAAACTCGCCCAACTCGTTAACTCAGCACCCGCGATTCCCCGACTCGGCATCCCCAAATACCAGTGGTGGAGCGAAGCCTTGCACGGCGTCGCCGACGCAGGCCTCGGCATCCGATTCAATGGCACTATCAAATCCGCCACCAGCTTCCCTCAAGTCATTCTCACTGCGGCTTCCTTCGATCAAAACCTCTGGTACAATATCAGCAAGGCGATTGGCCGGGAAGCGAGGGCGGTGTACAATGCGGGGCAAGCGTTAGGAATGACGTTTTGGGCTCCGAACATTAACGTTTTCAGGGATCCACGGTGGGGGAGGGGACAAGAGACGGTGGGAGAAGACCCATTAATGAATGCAAGGTATAGTGTGGCTTACGTGAGAGGGCTTCAAGGGGATTCCTTTGAAGGAGGGAAACTTGGGGAGAGCCTTCAAGCTTCCGCGTGTTGCAAGCACTTCACAGCCTATGATATTGACCAATGGAAGGGCCTCGATCGCTTTGTCTTCGATGCTCGTGTCTCAAAGCAAGATTTGGCAGACACATACCAACCTCCATTCCAGAGTTGCATTCAGCAAGGTCGAGCCAGTGGTATAATGTGTGCTTACAACCGTGTCAATGGGGTTCCAAACTGTGCAGATTTTAATCTCTTAACCAAAACTGCAAGGCAACAATGGAAATTTGATGGATATATTACGTCAGATTGTGGAGCAGTCTCTATCATACACGACAAACAAGGTTACGCAAAAACAGCAGAAGATGCTATAGCCGATGTCTTTAGGGCAGGGATGGATGTGGAATGTGGTGATTACATAACTAAGCATGCAAAATCAGCGGTTTCGCAGAAAAAGTTGTCCATATCTCAAATAGACCGCGCTCTTCAGAACCTATTCTCAATAAGAATGAGGCTAGGCCTATTTGATGGGAACCCCACTAAACTTCCCTATGGCACCATTGGTCCCAACGAAGTGTGTTCCAAAGAACACCTCCAACTGGCTCTTGAAGCAGCAAGAGATGGCATAGTCCTTCTGAAGAACACTGACTCATTTCTCCCACTTCCAAAAGCAAGCCATAGTGTTGCTGTGATTGGCCCAAATGCCAATGCCTCGTCACTAGTTTCCCTAGGAAACTATTATGGTCGTCCTTGCAAATTGGTGACCCTTTTGCAAGGCTTTGAAGGCTACTCTAAGGACACCACTTACCACCCTGGGTGTGATGATGGCCCACAATGTGCCTCTGCACGGATAGAAGAGGCAGTGGAGGTTGCGAAAAAGGTAGATTATGTGGTGCTTGTTATGGGGTTGGATCAAAGTCAAGAGAGGGAGTCACATGACAGAGAATATCTAGGTTTGCCAGGGAAGCAAGAAGAGTTGATCAAGAGTGTGGCCAAAGCTTCTAAGAGGCCAGTTGTTTTGGTGCTGTTGTGTGGAGGGCCAGTGGATATCACTTCAGCCAAGTTTGATAACAAAGTTGGAGGAATCTTGTGGGCAGGGTACCCTGGGGAACTTGGAGGAGTGGCCCTGGCTCAGGTTATCTTTGGTGACCATAACCCAGGTGGTAAACTACCAATTACTTGGTACCCTAAGGATTTCATCAGAATACCAATGACAGATATGAGGATGAGAGCTGATTCAGCCTCAGGTTACCCAGGGAGAACCTACAGATTTTACACTGGTCCAAAGGTCTATGAATTCGGCTATGGCCTAAGCTACACAAAATATTCCTACAATCTCCTCTCTCTCTCACAAAACACCCTCCACATCAACCAATCCTCTACCCATTTGATGACTGAGAATTCTGAAACCATCCGTTACAAACTGGTTGTAGACTTGGGAGAACAAACATGCCAATCCATGTCATTGTCAATCACTTTGGGGGTCACAAATCATGGTAACATGGCAGGGAAGCATCCCGTGTTGTTGTTTTCGAAGAAGGGACAAGTGAGAAACGGGAATCCGGTGAAACAATTGGTGGGTTTTCAAAGTGTGAAGTTAAATGCAGGGGAAACTGCTCAAGTGGGATTTGAGCTAAGCCCTTGTGAGCATCTTAGCGTGGCAAACGAGGCTGGTTCATTGGTGATTGAAGAAGGCTCTTATTTGTTGCTTGTGGGGGACCAAGAGTACCCATTAAAAGTCACAGTTTGA 2331 0.4822 MALPPSSVPTTFFIISLLLTLLLAESTQPPHSCDSSSNSPYYAFCNTKLPIPQRAKDLVSRLTLDEKLAQLVNSAPAIPRLGIPKYQWWSEALHGVADAGLGIRFNGTIKSATSFPQVILTAASFDQNLWYNISKAIGREARAVYNAGQALGMTFWAPNINVFRDPRWGRGQETVGEDPLMNARYSVAYVRGLQGDSFEGGKLGESLQASACCKHFTAYDIDQWKGLDRFVFDARVSKQDLADTYQPPFQSCIQQGRASGIMCAYNRVNGVPNCADFNLLTKTARQQWKFDGYITSDCGAVSIIHDKQGYAKTAEDAIADVFRAGMDVECGDYITKHAKSAVSQKKLSISQIDRALQNLFSIRMRLGLFDGNPTKLPYGTIGPNEVCSKEHLQLALEAARDGIVLLKNTDSFLPLPKASHSVAVIGPNANASSLVSLGNYYGRPCKLVTLLQGFEGYSKDTTYHPGCDDGPQCASARIEEAVEVAKKVDYVVLVMGLDQSQERESHDREYLGLPGKQEELIKSVAKASKRPVVLVLLCGGPVDITSAKFDNKVGGILWAGYPGELGGVALAQVIFGDHNPGGKLPITWYPKDFIRIPMTDMRMRADSASGYPGRTYRFYTGPKVYEFGYGLSYTKYSYNLLSLSQNTLHINQSSTHLMTENSETIRYKLVVDLGEQTCQSMSLSITLGVTNHGNMAGKHPVLLFSKKGQVRNGNPVKQLVGFQSVKLNAGETAQVGFELSPCEHLSVANEAGSLVIEEGSYLLLVGDQEYPLKVTV* 777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0995 776 Pfam Fibronectin type III-like domain 702 768 IPR026891 -
Vra6g0995 776 SUPERFAMILY (Trans)glycosidases 42 402 IPR017853 -
Vra6g0995 776 Gene3D - 54 376 IPR036962 GO:0004553|GO:0005975
Vra6g0995 776 SMART Fn3_like_2 699 769 IPR026891 -
Vra6g0995 776 Pfam Glycosyl hydrolase family 3 N terminal domain 108 360 IPR001764 GO:0004553|GO:0005975
Vra6g0995 776 Gene3D - 388 633 IPR036881 GO:0004553|GO:0005975
Vra6g0995 776 SUPERFAMILY Beta-D-glucan exohydrolase, C-terminal domain 403 636 IPR036881 GO:0004553|GO:0005975
Vra6g0995 776 Pfam Glycosyl hydrolase family 3 C-terminal domain 403 633 IPR002772 GO:0004553|GO:0005975
Vra6g0995 776 Gene3D Immunoglobulins 634 776 IPR013783 -
Vra6g0995 776 PRINTS Glycosyl hydrolase family 3 signature 115 134 IPR001764 GO:0004553|GO:0005975
Vra6g0995 776 PRINTS Glycosyl hydrolase family 3 signature 209 225 IPR001764 GO:0004553|GO:0005975
Vra6g0995 776 PRINTS Glycosyl hydrolase family 3 signature 283 301 IPR001764 GO:0004553|GO:0005975
Vra6g0995 776 PANTHER SUGAR HYDROLASE-RELATED 12 775 IPR044993 GO:0009044|GO:0045493
Vra6g0995 776 PANTHER GLYCOSIDE HYDROLASE FAMILY 3 PROTEIN 12 775 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0995 Vra-Chr6 12463606 12468510 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0995 25 776 Glycoside Hydrolase AT1G78060 64.465 0.0 1014
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0995 - - gmx:100780688 1388.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0995 6 12463606 12468510 Vra6g0995 6 12463606 12468510 ECH
Vra6g0995 6 12463606 12468510 Vra5g0903 5 15160320 15164248 PCT