Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0903 ATGGGCAGCAGCTTCACTTTTGCAGCCATCATTTTCCTCACTCTTCAGACTGCTCACTCATCTAACCCACCTTTCGCTTGCGATTGGTCCAATCCTGCTTCCAAATCCTACCCATTCTGCAACCCCAAACTCCCCATCCCCCAACGAACCAAAGACCTTCTCTCCAGACTCACACTTCAAGAGAAACTCTCCCAGCTCGTCAACACCGCTCCTTCCATCCCCCGCCTCGGCATCCCCGCCTACCAGTGGTGGAGCGAGGCCCTCCACGGCGTAGGAAACGTCGGCCCCGGCATCCACTTCAACGCCTCCATCTCCTCCGCCACCAGCTTCCCTCAGGTCATCCTCAGTGCAGCCACCTTCGACTCCCTCCTCTGGTACCGAATCGGACGCGCCATTGGGATCGAAGCCCGCGCAATCTATAATGCAGCCCAGGCCCAGGGCCTCACCTTCTGGGCTCCCAATATCAACATCTTCAGGGACCCGCGATGGGGCAGAGGGCAAGAGACACCCGGCGAAGACCCTCTCCTCACTTCTCGCTACGCAGTTTCCTACGTCAGAGGCCTCCAAGGAGACTCCTTCCACGGCGGCAAGTTGAGGGGCCACCTTCAAGCCTCCGCCTGTTGCAAACACTTCACGGCTTACGATCTGGACAATTGGAAGGGCGTGGATCGCTTTCTCTTCGATGCTCGCGTGAGTTTGCAAGATTTAGCAGACACGTACCAGCCTCCGTTTCAGAGTTGCGTACAGCAAGGAGGGGCCAGTGGGATAATGTGTGCTTACAATCGCGTGAACGGGGTTCCAAGCTGTGCGGATTTCAACCTGTTAACCAAAACGGTCAGAAAAAAATGGCATTTCCGTGGCTATATTACGTCAGATTGCGGAGCAGTCGGGATCATACATGACCAGCAAGGGTTTGCAAAATCAGCCGAGGATGCTGTAGCTGATGTTCTCCGTGCTGGAATGGATGTGGAATGTGGTAGTTATCTGACGGGTCATGCTGAATCGGCAGTGTTGCAGAAAAAAGTATCCATGTCTGAAATAGACCGTGCCCTTCACAACCTGTTTTCCATTAGAATGAGGCTAGGCCTGTTTGGTGGAAATCCAAGCAGTCTCCCATTTGGTATGATTGGTCCGAATCATGTGTGTTCCAAAGAGCACCAATATCTGGCTCTTGAAGCTGCAAGAAATGGCATTGTGCTCTTAAAAAACTCTCCCACACTTCTACCACTCCCCAAAACAAGCCCCAGTATTTCCTTAGCAGTGATAGGTCCCAATGCCAATGCTTCTCCACTAACTCTTCTTGGAAACTATGCTGGTCCTCCTTGTAAATTTGTCACAATATTGCAAGGCTTTCAGCACTACGTTAAGAACGCCGTTTATCATCCTGGGTGTGATGGTGGACCAAAGTGTTCTTCGGCTAAAATTGAGCAGGCAGTAGAAGTTGCAAAAAAAGTGGATTATGTTGTGCTGGTTATGGGATTGGATCAAAGTGAAGAGAGGGAAGAACGTGATCGCATTCATCTAGACTTGCCGGGCAAGCAACTTGAACTCGTCAACAGCGTTGCCGAAGCTTCTAAAAAACCAGTTATTTTGGTGCTGCTTTGTGGAGGGCCTGTAGATATCAGTTCAGCCAAGTATAACCACAAAATCGGAGGCATCCTCTGGGCTGGTTATCCCGGAGAACTTGGAGGCATTGCACTTGCACAGATTATCTTTGGCGACCACAACCCAGGAGGAAGACTTCCAGTTACTTGGTACCCAAAAGATTACATCAAAGTACCCATGACAGACATGAGAATGAGAGCCGATCCTTCTACGGGCTATCCTGGGAGAACTTACCGATTTTACAAAGGTCCAAAAGTCTATGAATTTGGCTATGGACTAAGCTATTCGAAATATTCCTATGAGTTTGTTTCTGTTACACATGACAAGCTTCACTTGAACCAGTCATCCACTCATTTCATGGTTGAAAATTCAGAAACCGTAAGGTACAAACTAGTTTCGGAGTTGGGAGAACAAACCTGCCAAAGCATGTCACTCTCGGTCACTGTGAGAGTTCAAAATCATGGAAGCTTGGTGGGGAAGCATCCTGTATTGCTGTTTATGAGGCCTAAAATCCAGAAAAGTGGAAACCCTGTGAAACAGTTGGTTGGTTTCCAGAGTGTGATGCTTGATGCAGGGGAAATGACTCATGTTGGATTTGTGGTGAGTCCTTGCGAACATCTTAGTAGAGCAAATGAAGCTGGTGCAATGATTATTGAAGAAGGGTCTCAGGTGTTGCTTGTGGATGATCAAGAGCACCCGATAGATATAATTGTTTGA 2322 0.4905 MGSSFTFAAIIFLTLQTAHSSNPPFACDWSNPASKSYPFCNPKLPIPQRTKDLLSRLTLQEKLSQLVNTAPSIPRLGIPAYQWWSEALHGVGNVGPGIHFNASISSATSFPQVILSAATFDSLLWYRIGRAIGIEARAIYNAAQAQGLTFWAPNINIFRDPRWGRGQETPGEDPLLTSRYAVSYVRGLQGDSFHGGKLRGHLQASACCKHFTAYDLDNWKGVDRFLFDARVSLQDLADTYQPPFQSCVQQGGASGIMCAYNRVNGVPSCADFNLLTKTVRKKWHFRGYITSDCGAVGIIHDQQGFAKSAEDAVADVLRAGMDVECGSYLTGHAESAVLQKKVSMSEIDRALHNLFSIRMRLGLFGGNPSSLPFGMIGPNHVCSKEHQYLALEAARNGIVLLKNSPTLLPLPKTSPSISLAVIGPNANASPLTLLGNYAGPPCKFVTILQGFQHYVKNAVYHPGCDGGPKCSSAKIEQAVEVAKKVDYVVLVMGLDQSEEREERDRIHLDLPGKQLELVNSVAEASKKPVILVLLCGGPVDISSAKYNHKIGGILWAGYPGELGGIALAQIIFGDHNPGGRLPVTWYPKDYIKVPMTDMRMRADPSTGYPGRTYRFYKGPKVYEFGYGLSYSKYSYEFVSVTHDKLHLNQSSTHFMVENSETVRYKLVSELGEQTCQSMSLSVTVRVQNHGSLVGKHPVLLFMRPKIQKSGNPVKQLVGFQSVMLDAGEMTHVGFVVSPCEHLSRANEAGAMIIEEGSQVLLVDDQEHPIDIIV* 774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0903 773 Pfam Glycosyl hydrolase family 3 N terminal domain 74 354 IPR001764 GO:0004553|GO:0005975
Vra5g0903 773 PANTHER GLYCOSIDE HYDROLASE FAMILY 3 PROTEIN 5 772 - -
Vra5g0903 773 PANTHER SUGAR HYDROLASE-RELATED 5 772 IPR044993 GO:0009044|GO:0045493
Vra5g0903 773 Pfam Glycosyl hydrolase family 3 C-terminal domain 398 630 IPR002772 GO:0004553|GO:0005975
Vra5g0903 773 Gene3D Immunoglobulins 659 772 IPR013783 -
Vra5g0903 773 PRINTS Glycosyl hydrolase family 3 signature 110 129 IPR001764 GO:0004553|GO:0005975
Vra5g0903 773 PRINTS Glycosyl hydrolase family 3 signature 204 220 IPR001764 GO:0004553|GO:0005975
Vra5g0903 773 PRINTS Glycosyl hydrolase family 3 signature 278 296 IPR001764 GO:0004553|GO:0005975
Vra5g0903 773 SUPERFAMILY (Trans)glycosidases 37 396 IPR017853 -
Vra5g0903 773 Gene3D - 383 631 IPR036881 GO:0004553|GO:0005975
Vra5g0903 773 Gene3D - 49 370 IPR036962 GO:0004553|GO:0005975
Vra5g0903 773 SUPERFAMILY Beta-D-glucan exohydrolase, C-terminal domain 398 633 IPR036881 GO:0004553|GO:0005975
Vra5g0903 773 SMART Fn3_like_2 696 766 IPR026891 -
Vra5g0903 773 Pfam Fibronectin type III-like domain 698 763 IPR026891 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0903 Vra-Chr5 15160320 15164248 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0903 19 773 Glycoside Hydrolase AT1G78060 65.435 0.0 1026
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0903 - - aprc:113867121 1361.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0995 6 12463606 12468510 Vra5g0903 5 15160320 15164248 PCT