Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0790 ATGGCTGCAGACCCTCAGAAAATTCATCCTGTGTATGATGTTGAAGCACCAAACCACCCTTCAGCACCTTTGGTGCCAAGAAGCATGTCTAAATCAGATGCAGGTGATCCAGAGAGAGTAGTGCTACAACAACAGCAACAACATCCTCCACAACACACCATTCCTGTGATGCATTCAAGGCCACCAAAGAAAAGAAGAAGCTGCTGCTGCAGGTTTTTCTGTTGGTTGATAAGCATATTGGTGATTCTGATTGTGGCCATTGGTATCACAGTTGGGATACTATACCTTGTGTTCAGACCAAAGGTTCCAAAGTACTCTGTGGATGAGCTTATAGTCACACAGTTTGATATCTCTGACAACAACAGTTTATCTGCCACTTTCAACCTGACAATCACTGCCAGAAACCCTAACAAGAAGATTGGAATATACTACAGAGGTGGCAGCCATATAAGTGCTTGGTATGATGACACAAAACTGTGTGAAGGGTCTTTACCAAAGTTTTACCAAGGTCACCGCAACACCACAGTGCTCAGTATCCCTCTCACTGGTCAAACACAGGATGCTACTGGTCTGCAAAGTAGCCTTCAGCAGCAGCTGCAAGACACAGGAAATGTGCCTCTCAATTTGAAGGTGAATCAGCCTGTGAGGATCAAATTTGGGAAGTTGACACTGTTCACAATCAAGTTCAGGGTTAGGTGCAATATTGTGGTGGACAACCTTAGTGCTAATAGTTCTATTAGAATTCAGAGCAGTAGTTGTAAATTCAGGTTAAGGCTGTGA 780 0.4372 MAADPQKIHPVYDVEAPNHPSAPLVPRSMSKSDAGDPERVVLQQQQQHPPQHTIPVMHSRPPKKRRSCCCRFFCWLISILVILIVAIGITVGILYLVFRPKVPKYSVDELIVTQFDISDNNSLSATFNLTITARNPNKKIGIYYRGGSHISAWYDDTKLCEGSLPKFYQGHRNTTVLSIPLTGQTQDATGLQSSLQQQLQDTGNVPLNLKVNQPVRIKFGKLTLFTIKFRVRCNIVVDNLSANSSIRIQSSSCKFRLRL* 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0790 259 PANTHER EMBRYOGENESIS ABUNDANT HYDROXYPROLINE-RICH GLYCOPROTEIN, PUTATIVE-RELATED 19 257 - -
Vra6g0790 259 MobiDBLite consensus disorder prediction 39 53 - -
Vra6g0790 259 Gene3D - 97 241 - -
Vra6g0790 259 MobiDBLite consensus disorder prediction 1 59 - -
Vra6g0790 259 SUPERFAMILY LEA14-like 109 222 - -
Vra6g0790 259 Pfam Late embryogenesis abundant protein 130 234 IPR004864 -
Vra6g0790 259 PANTHER LATE EMBRYOGENESIS ABUNDANT (LEA) HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY 19 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0790 Vra-Chr6 7744194 7745348 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0790 49 259 EF-hand Containing Proteins AT5G21130 30.841 1.33e-32 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0790 - - gmx:100782663 392.504
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0790 6 7744194 7745348 Vra6g0790 6 7744194 7745348 ECH
Vra10g0477 10 10658009 10659295 Vra6g0790 6 7744194 7745348 PCT