Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0477 ATGATGACGGAACACCAAAGAATTCATCCTGTTCATGATGTGGAGGCACCACACAGACCTCTGGTGCCTGGAAACAGTACTAAATCTGACAGGGTTTTTCCTAAACGGACCTTTCCAGTGATGCATTCGAAGCCACCAAAGAGAAGAAGAAGCTGTTGCTGCAGGTTTTTCTGTTGGACGCTTAGCATATTGCTGATATTGATCATTGCTATTGGCATCACTGTAGGGATCATGTACCTTGTTTTTAGGCCAAAACTCCCAAAATACTCGGTGGATCAGCTGAGGATAACCCAGTTCGATGTTTCTGAGAACAACACCCTCTCAGCAACATTCAATGTGGCAATCACTGCAACAAATCCAAACAAGAAGATTGGGATATACTATGAGGGTGGAAGCCACATAAGGGCTTTGTACATGGGCACACAATTGTGTGAAGGGTCTTTGCCAAAGTTCTACCAGGGTCACAGGAACACCACAGTGCTTGATCTGTCTCTATCAGGTGAAGCACAGGATGCAAGTTCCTTAACAAGTAGAATTCAGGAGCAGCTGCAGCAGACCAACAATATTCCTCTTGATCTTAAGGTTAATCAACCTGTTAGGGTTAAGCTTGGCAAGTTGAAGCTCTTCAAAGTCAAGTTCAGGGTTAGCTGCAAGCTTGTGGTGGATAATCTTGGTGCTAGTAATGATATTAGCATTTCAAGCAGTAGTTGTAAGTTCAGACTTAGGCTATGA 732 0.4372 MMTEHQRIHPVHDVEAPHRPLVPGNSTKSDRVFPKRTFPVMHSKPPKRRRSCCCRFFCWTLSILLILIIAIGITVGIMYLVFRPKLPKYSVDQLRITQFDVSENNTLSATFNVAITATNPNKKIGIYYEGGSHIRALYMGTQLCEGSLPKFYQGHRNTTVLDLSLSGEAQDASSLTSRIQEQLQQTNNIPLDLKVNQPVRVKLGKLKLFKVKFRVSCKLVVDNLGASNDISISSSSCKFRLRL* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0477 243 PANTHER EMBRYOGENESIS ABUNDANT HYDROXYPROLINE-RICH GLYCOPROTEIN, PUTATIVE-RELATED 35 241 - -
Vra10g0477 243 PANTHER LATE EMBRYOGENESIS ABUNDANT (LEA) HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY 35 241 - -
Vra10g0477 243 Pfam Late embryogenesis abundant protein 115 218 IPR004864 -
Vra10g0477 243 SUPERFAMILY LEA14-like 67 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0477 Vra-Chr10 10658009 10659295 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0477 47 243 EF-hand Containing Proteins AT5G21130 29.949 1.82e-31 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0477 - - gmx:100789322 362.844
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra10g0477 10 10658009 10659295 Vra6g0790 6 7744194 7745348 PCT