Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0744 ATGGCTCTGTGTTCCCCTGTTTCACTCTTTTCACTTCTCTTTGCGTTGTTGTTGTTGTTTTCCGCTTCCTCCTTCGCCAAACATGATTCGGTCTCCTTCTCTTTTCCTCTCAGGTCGCTTCCCCTCTCCGCAGGGAAGCCTCTAAAGACGAACCCAAAACTCAGAAGCCTTTCCTCGGCCTCGTACAACGTAAAATGGCCGTTCAAGTATTCGATGGCTCTGGTGGTAAGTCTCCCCATAGGGACACCTCCGCAGCATCAGCAAATGGTTTTGGACACCGGAAGCCAACTCTCGTGGATTCAGTGCCACAACAAAACTCCCCCAACGGCGTCCTTTGACCCTTCTCTCTCCTCCTCTTTCTACGTCATCCCCTGCACCCACCCTCTCTGCAAACCCCGCGTCCCCGATTTTACTCTCCCAACAACATGCGACCAGAACCGCCTCTGCCACTACTCCTACTTCTACGCCGATGGCACCTACGCCGAGGGCAACCTCGTCCGAGAAAAACTAACCTTCTCCCCTTCCCAAACAACCCCTCCACTTACCCTCGGCTGCGCCACCGAGTCCCGCGACGCCGGCGGCATTCTCGGAATGAACCTCGGCCGCCTTTCCTTTCCCTCGCAGGCCAAAATAACCAAATTCTCGTACTGCGTCCCCACCCGACAATCCCGATCCGGGAACCTTCCAACTGGGTCGTTCTACCTCGGCAACAATCCCAACTCCGGGCGCTTCCGTTACGTCAGCATGTTGACGTTTAGTCAAAGTCAACGCATGCCGAATTTGGACCCGCTGGCCTACACCGTCCCCATGCAGGGAATTAGAATTGGTGGCAAGAGGCTAAATATCAATCCTTCCGTTTTCCGCCCTGACGCCGGCGGGTCGGGGCAGACGATGATCGACTCCGGATCCGAATTCACCTTCTTAGTCGACGAGGCTTACGACAGGGTGCGCGAGGAGGTGGTTAGAGTTGTGGGGCCAAGGATTAAGAAGGGGTACGTGTACGGCGGAGTCGCGGACATGTGTTTTGACGGTTCTGCGAGGGAGTCAATCGGACGGGTGATAGGGGACGTGGTGTTGGAATTCGAGAAAGGCGTGGAGATAGTGGTTCCAAAGGAGAGGGTGCTGGCTGACGTGGGCGGTGGGGTCCACTGCGTGGGAATTGGCAGGTCGGAGAGATTAGGTGCAGCCAGCAACATCATAGGGAACATCCATCAGCAGAATCTGTGGGTGGAGTTCGACCTGGCGAATCACAGAGTCGGGTTCGGTGAGGCGGATTGTAGCAGATCGTAG 1290 0.5581 MALCSPVSLFSLLFALLLLFSASSFAKHDSVSFSFPLRSLPLSAGKPLKTNPKLRSLSSASYNVKWPFKYSMALVVSLPIGTPPQHQQMVLDTGSQLSWIQCHNKTPPTASFDPSLSSSFYVIPCTHPLCKPRVPDFTLPTTCDQNRLCHYSYFYADGTYAEGNLVREKLTFSPSQTTPPLTLGCATESRDAGGILGMNLGRLSFPSQAKITKFSYCVPTRQSRSGNLPTGSFYLGNNPNSGRFRYVSMLTFSQSQRMPNLDPLAYTVPMQGIRIGGKRLNINPSVFRPDAGGSGQTMIDSGSEFTFLVDEAYDRVREEVVRVVGPRIKKGYVYGGVADMCFDGSARESIGRVIGDVVLEFEKGVEIVVPKERVLADVGGGVHCVGIGRSERLGAASNIIGNIHQQNLWVEFDLANHRVGFGEADCSRS* 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0744 429 CDD pepsin_A_like_plant 75 426 IPR034161 -
Vra6g0744 429 ProSiteProfiles Peptidase family A1 domain profile. 74 422 IPR033121 -
Vra6g0744 429 SUPERFAMILY Acid proteases 75 427 IPR021109 -
Vra6g0744 429 Gene3D Acid Proteases 241 429 IPR021109 -
Vra6g0744 429 PANTHER ASPARTYL PROTEASE-RELATED 46 429 IPR001461 GO:0004190|GO:0006508
Vra6g0744 429 Pfam Xylanase inhibitor N-terminal 75 231 IPR032861 -
Vra6g0744 429 Gene3D Acid Proteases 61 232 IPR021109 -
Vra6g0744 429 PRINTS Pepsin (A1) aspartic protease family signature 80 100 IPR001461 GO:0004190|GO:0006508
Vra6g0744 429 PRINTS Pepsin (A1) aspartic protease family signature 297 308 IPR001461 GO:0004190|GO:0006508
Vra6g0744 429 PRINTS Pepsin (A1) aspartic protease family signature 398 413 IPR001461 GO:0004190|GO:0006508
Vra6g0744 429 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 46 429 - -
Vra6g0744 429 Pfam Xylanase inhibitor C-terminal 265 422 IPR032799 -
Vra6g0744 429 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 89 100 IPR001969 GO:0004190|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0744 Vra-Chr6 7154952 7156755 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0744 66 428 Miscellaneous Gene Families AT1G77480 24.619 5.55e-18 84.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0744 - - gmx:100790706 715.301
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0927 3 9286357 9288290 Vra6g0744 6 7154952 7156755 PCT