Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0927 ATGACTCCGACACTCTTCTTCATCTTCTTCTTTCCTCTTCTCTCCTCTGCAAACCACTCCTTCCAACTCAACCACACCTCATTCTCACTCTCTTTCCCTCTCACTTCACTCCCTCTCTCCACCAACACCGCCTCCAACATGCTACGCGACTCTCTCATTGTGTACTCTAACCGCACCACAAATACCACGCGACTTCCTTCGCCTTCTTCTCCGTATAACTACAGGCTAACCTTCAATTACTCCATGGCTTTGATCGTCAACCTTCCCATTGGGACCCCACCGCAGGTTCAGCCTATGGTGTTGGACACCGGAAGCCAACTATCGTGGATTCAGTGTCACAGAAAACCACCCAAGGTGCCTCCCCCAACCGTCTCCTTTGACCCTTCTCGCTCCTCCACTTTCTCTAATCTTCCCTGTACTCACCCCGTTTGCAAACCACGAATTCCCGATTTTACCCTCCCCACTTCCTGCGACCAGAACCGCCTCTGTCACTACTCCTACTTCTACGCCGACGGTACCTACGCCGAGGGAAATCTCGTCAGAGAAAAATTCACATTCTCCCGTTCCCTTTTTACCCCTCCTTTGATCCTCGGCTGCGCCACTGAGTCCACCGACCCCAGGGGCATTTTGGGAATGAATCGTGGACGCCTCTCCTTCGCTTCACAATCTAAAATAACCAAATTCTCCTACTGCGTTCCCACCCGAGAAACCCGACCCGGATCCACTCCAACCGGGTCGTTCTACCTGGGCCACAACCCGAACTCTCTCCGGTTTCGGTTTATCCCGATGTTGACTTTTGCTCAGAGTCAACGTATGCCAAATCTTGACCCCTTGGCTTACACTGTCGCCTTGCAGGGGATAAGAATCGGAGGCAGAAAACTGAACATTTCGCCGGCTGTTTTTCACGCCGACGCTGGCGGGTCGGGTCAAACCATGGTTGACTCCGGATCCGAGTTTACTTACCTCGTTGGTGAGGCTTATGATAAGGTGCGGGCGGAAGTAGTGAGGAGTGTGGGGCCCAGAATGAAGAAGGATTACGTGTACGGTGGCGTTGCGGACATGTGCTTCGACGGGAATGCGATTGAGATCGGACGGCTTATAGGGGACATGGTGTTTGAGTTCGAGAAGGGCGTGGAAATAGTGATTCCCAAGGAGAGGGTTCTGGCTTCCGTGGAGGGCGGGGTCCACTGCGTCGGGATTGGCAACTCTGATAAATTGGGTGCGGCCAGTAACATCATCGGGAATTTCCATCAGCAGAATCTGTGGGTGGAGTTTGATCTCGCCAATCGCAGAGTGGGTTTCGGTGCGGCTGATTGTAGCAGATTGGCTCCATAG 1335 0.5303 MTPTLFFIFFFPLLSSANHSFQLNHTSFSLSFPLTSLPLSTNTASNMLRDSLIVYSNRTTNTTRLPSPSSPYNYRLTFNYSMALIVNLPIGTPPQVQPMVLDTGSQLSWIQCHRKPPKVPPPTVSFDPSRSSTFSNLPCTHPVCKPRIPDFTLPTSCDQNRLCHYSYFYADGTYAEGNLVREKFTFSRSLFTPPLILGCATESTDPRGILGMNRGRLSFASQSKITKFSYCVPTRETRPGSTPTGSFYLGHNPNSLRFRFIPMLTFAQSQRMPNLDPLAYTVALQGIRIGGRKLNISPAVFHADAGGSGQTMVDSGSEFTYLVGEAYDKVRAEVVRSVGPRMKKDYVYGGVADMCFDGNAIEIGRLIGDMVFEFEKGVEIVIPKERVLASVEGGVHCVGIGNSDKLGAASNIIGNFHQQNLWVEFDLANRRVGFGAADCSRLAP* 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0927 444 Pfam Xylanase inhibitor C-terminal 279 435 IPR032799 -
Vra3g0927 444 SUPERFAMILY Acid proteases 85 442 IPR021109 -
Vra3g0927 444 Pfam Xylanase inhibitor N-terminal 85 240 IPR032861 -
Vra3g0927 444 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 7 443 - -
Vra3g0927 444 Gene3D Acid Proteases 62 250 IPR021109 -
Vra3g0927 444 CDD pepsin_A_like_plant 85 439 IPR034161 -
Vra3g0927 444 ProSiteProfiles Peptidase family A1 domain profile. 84 435 IPR033121 -
Vra3g0927 444 PANTHER ASPARTYL PROTEASE-RELATED 7 443 IPR001461 GO:0004190|GO:0006508
Vra3g0927 444 Gene3D Acid Proteases 251 443 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0927 Vra-Chr3 9286357 9288290 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0927 86 442 Miscellaneous Gene Families AT1G44130 22.532 8.89e-21 92.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0927 - - gmx:100803089 748.429
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0927 3 9286357 9288290 Vra6g0744 6 7154952 7156755 PCT