Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0732 ATGGCTGTGCATTTTCTTCTTCTGCTTTTTGCAGTGTCTCTTGTTGCTGCTGACGACGATGCATTTATTGGAGTGAACATTGGAACAGATCTCTCTGATATGCCACATCCTACTCAAGTAGTAGCTCTACTTAAAGCCCAGCAAATCCGGCATGTTCGATTGTATGATGCAGACCAAGCTATGCTCCTTGCACTTGCAAAGACAGGCATTCAAGTTGTTGTGACTGTTCCTAATGAAGAACTTCTTGCAATTGGTCAATCCAATTCCACAGCCGCCAACTGGGTTTCCCGCAATGTGGTAGCACATTATCCAGCCACCAATATCACAGCCATTTGTGTTGGTTCTGATGTTTTAACGTCTCTCCCAAATGCAGCAAAAGTTCTTGTCAGCGCCATTAAGTACATTCATTCAGCCCTTGTTGCATCCAATCTTGATCGCCAAGTTAAAGTTTCCACACCCCTTTCATCTTCCATCATCCTTGATTCATTTCCACCTTCCCAGGCGTTCTTCAACCGTTCACTCAATCCAGTTTTAGTCCCTCTACTTGATTTCTTGCAATCCACTGGATCTTATCTAATGCTGAACATTTACCCTTACTATGACTACATGCAATCAAATGGAGTGATTCCATTAGACTATGCACTCTTCAAAACTCTCCCTCCCAACAAAGAGGCTGTGGATTCAAATACCCTTCTTCACTACACCAATGTCTTTGATGCCATGGTTGATGCTGCATACTTTGCCATGGCTTTTCTCAACTACACCAACATTCCAGTAGTGGTGACCGAGTCAGGGTGGCCCTCGAAAGGTGGCTCCAACGAACCTGATGCAACGGTAGACAATGCCAACACTTACAACAGCAATCTGATCAAGCATGTGTTTAACAAAACCGGAACTCCCAAACATCCTGGAATTGCAGTCAGTACTTACATATATGAGCTCTACAACGAGGATACGAAGCCAGGGCCATTATCTGAGAAGAACTGGGGACTATTTGATTCAAATGGAGCACCTGTTTACATTCTTCGCTTGACAGAATCAGGGGCACTCCTTGCAAATGATACCAGCAATCAAACCTTCTGCATTGCCAAGGATGGTGCTGATCCGAAGATGCTGCAGGCTGCATTAGATTGGGCATGTGGACCAGGGAAGGTCGAATGCTCTCCGTTGCTGCAAGGGCAACCATGCTATGAACCGGACAATGTGATTGCTCATGCAAATTATGCTTTTGACACTTACTATCATAAGATGGGAAAAACTCCCGATGCCTGTGATTTCAATGGTGTAGCTACCATCTCCACCTCAGATCCAAGTCATGGTTCTTGTTTATTTCCTGGAAGTCTTGGGAAAAATGGCACCTTAGGTAACTTCACAGCTCCATCCATGAATTCTACAAATTCAGATTCCTCAGCATACAACCTTGACAACTGTGACTTGAGAATTAGAAGTCTTCTAATGGCAACAGGATTTCTAATATGGGGAGCTGTATTGCTATGA 1497 0.4409 MAVHFLLLLFAVSLVAADDDAFIGVNIGTDLSDMPHPTQVVALLKAQQIRHVRLYDADQAMLLALAKTGIQVVVTVPNEELLAIGQSNSTAANWVSRNVVAHYPATNITAICVGSDVLTSLPNAAKVLVSAIKYIHSALVASNLDRQVKVSTPLSSSIILDSFPPSQAFFNRSLNPVLVPLLDFLQSTGSYLMLNIYPYYDYMQSNGVIPLDYALFKTLPPNKEAVDSNTLLHYTNVFDAMVDAAYFAMAFLNYTNIPVVVTESGWPSKGGSNEPDATVDNANTYNSNLIKHVFNKTGTPKHPGIAVSTYIYELYNEDTKPGPLSEKNWGLFDSNGAPVYILRLTESGALLANDTSNQTFCIAKDGADPKMLQAALDWACGPGKVECSPLLQGQPCYEPDNVIAHANYAFDTYYHKMGKTPDACDFNGVATISTSDPSHGSCLFPGSLGKNGTLGNFTAPSMNSTNSDSSAYNLDNCDLRIRSLLMATGFLIWGAVLL* 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0732 498 Pfam X8 domain 360 431 IPR012946 -
Vra6g0732 498 ProSitePatterns Glycosyl hydrolases family 17 signature. 257 270 IPR000490 GO:0004553|GO:0005975
Vra6g0732 498 SMART X8_cls 359 444 IPR012946 -
Vra6g0732 498 Gene3D Glycosidases 22 349 - -
Vra6g0732 498 SUPERFAMILY (Trans)glycosidases 23 342 IPR017853 -
Vra6g0732 498 Pfam Glycosyl hydrolases family 17 23 342 IPR000490 GO:0004553|GO:0005975
Vra6g0732 498 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 6 483 IPR044965 GO:0004553|GO:0005975
Vra6g0732 498 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE 2 6 483 - -
Vra6g0732 498 Gene3D - 353 444 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0732 Vra-Chr6 7007455 7010427 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0732 17 467 Glycoside Hydrolase AT1G66250 76.821 0.0 745
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0732 K19891 - gmx:100799965 940.643
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0936 3 9406783 9409983 Vra6g0732 6 7007455 7010427 PCT