Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0936 ATGGCCAAGCACTTTCTTCTTCTTCTTCTTGCAGTGTATGTGGCTGCAATTGATGAAGAACCATTCATTGGGGTGAACATTGGAAGAGATCTCTCAGATATGCCTCACCCCACTCAAGTAGTGGCACTACTTAAAGCTCAGCAAATTCGACATGTTAGATTGTATGATGCTGACCAAGCAATGCTCATTGCCCTTGCAAACACAGGAATACGAGTTGCTGTGTCTGTTCCTAATGAAGAGATCCTAGCAATTGGTCAATCGAACACTACAGCTGCTAAGTGGGTTTCGCGTAATGTGGTGGCTCATTACCCTGCCACTAACATAACATCTATCTGTGTTGGTTCTGAGGTTTTAACTGCCCTCCCCAATGCGGCAAAAGTGCTTGTCAGTGCCCTTAAGTTCATTCATTCGGCCCTTCTGGCGTCAAATCTTGATCACCAAATTAAAGTTTCAACACCCCTTTCCTCTTCCATGATCCTTGACTCATTTCCACCTTCACAAGCCTTCTTCAACCGCTCGCTGAATCCAGTCTTGGTTCCAATGTTTGATTTCTTGCAAAGCACTGGTTCTTATCTAATGCTCAACACCTACCCTTACTATGATTATATGAAGTCAGATGGTGTGTTCCCGTTGGACTATGCACTCTTCAAACCCCTCCCTCCAAACAAAGAAGTCATCGATTCTAACACTCTTCTCCACTACTCCAACGTGTTTGATTCTGTGATTGATGCAGCATACTTTGCCATGGCTTTTCTCAACTACACTAACATTCCCGTGGTGGTGAGTGAAACAGGTTGGCCCTCAAAAGGTGACTCTAATGAACCAGATGCAACAGTAGAAAATGCCAACACTTACAACAGCAATTTGATCAAGCATGTGCTTAACGTAACTGGAACTCCCAAACACCCCGGCATTGGTGTTAGTACTTACATCTATGAACTCTACAATGAGGATGCAAAGGCAGGTTCATTGTCTGAGAAGAACTGGGGTTTGTTTGACGCAAATGGGAAACCTATTTATGTTTTACGGTTAACAGAATCAGGAGGAGTGCTAGCAAATGACACCACCAATCAAACTTACTGTGTTGCAAAAGATGGTGCTGATCCCAAGATGCTGCAAGCTGGAATAGATTGGGCATGTGGACCTGGCAAGGTGGATTGCTCTCCTTTGCTGCAGGGACAACTATGTTATGAACCAGACAACGTAGTTGCACATGCAAATTATGCTTTTGACACTTACTATCATCAGATGGGAAAGTCTCCTCAGTCTTGTGATTTCAATGACATGGCTACAATCTCCACCACCAATCCTAGTCATGGATCGTGTGTGTTTCCAGGAAGTCTTGGCAAAAATGGAACCTTCCCTAACGTCACATTATCATCGATGAATTCCACAAATTCAGATTCTTCTGCCTGGAATCTACATCATGGTGTCAGAAGCCCTGTAATGATGATAGTACTTCTTCTGCTCATGGGAGTGGTTTGGCTATAA 1491 0.4373 MAKHFLLLLLAVYVAAIDEEPFIGVNIGRDLSDMPHPTQVVALLKAQQIRHVRLYDADQAMLIALANTGIRVAVSVPNEEILAIGQSNTTAAKWVSRNVVAHYPATNITSICVGSEVLTALPNAAKVLVSALKFIHSALLASNLDHQIKVSTPLSSSMILDSFPPSQAFFNRSLNPVLVPMFDFLQSTGSYLMLNTYPYYDYMKSDGVFPLDYALFKPLPPNKEVIDSNTLLHYSNVFDSVIDAAYFAMAFLNYTNIPVVVSETGWPSKGDSNEPDATVENANTYNSNLIKHVLNVTGTPKHPGIGVSTYIYELYNEDAKAGSLSEKNWGLFDANGKPIYVLRLTESGGVLANDTTNQTYCVAKDGADPKMLQAGIDWACGPGKVDCSPLLQGQLCYEPDNVVAHANYAFDTYYHQMGKSPQSCDFNDMATISTTNPSHGSCVFPGSLGKNGTFPNVTLSSMNSTNSDSSAWNLHHGVRSPVMMIVLLLLMGVVWL* 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0936 496 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE 2 6 478 - -
Vra3g0936 496 Pfam Glycosyl hydrolases family 17 23 342 IPR000490 GO:0004553|GO:0005975
Vra3g0936 496 ProSitePatterns Glycosyl hydrolases family 17 signature. 257 270 IPR000490 GO:0004553|GO:0005975
Vra3g0936 496 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 6 478 IPR044965 GO:0004553|GO:0005975
Vra3g0936 496 Gene3D Glycosidases 22 349 - -
Vra3g0936 496 SUPERFAMILY (Trans)glycosidases 23 342 IPR017853 -
Vra3g0936 496 Pfam X8 domain 360 431 IPR012946 -
Vra3g0936 496 Gene3D - 353 445 - -
Vra3g0936 496 SMART X8_cls 359 444 IPR012946 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0936 Vra-Chr3 9406783 9409983 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0936 18 487 Glycoside Hydrolase AT1G66250 71.519 0.0 724
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0936 K19891 - gmx:100811077 899.812
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0936 3 9406783 9409983 Vra6g0732 6 7007455 7010427 PCT