Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0710 ATGGCTGATGATCCTCAAGACGTGGCTGACAGGGAGCGCATTTTCAAGCGTTTTGATGCGAACGGCGATGGCCAAATCTCTTCAGCTGAGCTCGGAGAAGCACTGAAGGCACTTGGATCAGTAACACCAGAAGAGGTGCAAAGGATGATGGAAGAGATTGACACTGATGGAGATGGCTATATTTCACACGAAGAGTTCACAGAATTTGCAAGAGCCAACCGTGGCCTAGTCAGAGATGTTGCAAAGATTTTTTAA 255 0.4706 MADDPQDVADRERIFKRFDANGDGQISSAELGEALKALGSVTPEEVQRMMEEIDTDGDGYISHEEFTEFARANRGLVRDVAKIF* 85
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0710 84 PRINTS Recoverin family signature 14 35 - -
Vra6g0710 84 PRINTS Recoverin family signature 59 77 - -
Vra6g0710 84 PANTHER POLCALCIN NIC T 1 1 84 - -
Vra6g0710 84 SUPERFAMILY EF-hand 9 70 IPR011992 -
Vra6g0710 84 Gene3D - 2 84 - -
Vra6g0710 84 ProSitePatterns EF-hand calcium-binding domain. 19 31 IPR018247 -
Vra6g0710 84 CDD EFh 12 71 IPR002048 GO:0005509
Vra6g0710 84 ProSitePatterns EF-hand calcium-binding domain. 54 66 IPR018247 -
Vra6g0710 84 PANTHER TROPONIN 1 84 - -
Vra6g0710 84 SMART efh_1 45 73 IPR002048 GO:0005509
Vra6g0710 84 SMART efh_1 10 38 IPR002048 GO:0005509
Vra6g0710 84 ProSiteProfiles EF-hand calcium-binding domain profile. 44 76 IPR002048 GO:0005509
Vra6g0710 84 Pfam EF-hand domain pair 13 71 IPR002048 GO:0005509
Vra6g0710 84 ProSiteProfiles EF-hand calcium-binding domain profile. 6 41 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0710 Vra-Chr6 6707379 6708240 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0710 4 84 EF-hand Containing Proteins AT3G03430 70.370 4.38e-39 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0710 K13448 - gmx:100797564 157.147
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0947 3 9508012 9508351 Vra6g0710 6 6707379 6708240 PCT