Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0947 ATGGCCGAAGATGATCCACAAGATGTAGCTGATAGGGAACGAATTTTCAAGCATTTTGATTCCAATGGTGATGGGCAAATCTCTTCACAAGAGCTTGGTGAAGCCCTTAAAGCACTCGGATCTGTTACCCCAGATGAAGTTCAACGGATGATGGATGAAATTGACACAGATGGTGATGGCTTCATTTCTCATCAAGAGTTCACAGATTTTGCACGAGCCAACCGTGGTCTAATCAGGGATGTAGCCAAGATTTTCTAA 258 0.4341 MAEDDPQDVADRERIFKHFDSNGDGQISSQELGEALKALGSVTPDEVQRMMDEIDTDGDGFISHQEFTDFARANRGLIRDVAKIF* 86
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0947 85 ProSitePatterns EF-hand calcium-binding domain. 55 67 IPR018247 -
Vra3g0947 85 Gene3D - 2 85 - -
Vra3g0947 85 SUPERFAMILY EF-hand 10 71 IPR011992 -
Vra3g0947 85 PANTHER POLCALCIN NIC T 1 1 85 - -
Vra3g0947 85 CDD EFh 13 72 IPR002048 GO:0005509
Vra3g0947 85 ProSiteProfiles EF-hand calcium-binding domain profile. 7 42 IPR002048 GO:0005509
Vra3g0947 85 SMART efh_1 46 74 IPR002048 GO:0005509
Vra3g0947 85 SMART efh_1 11 39 IPR002048 GO:0005509
Vra3g0947 85 PANTHER TROPONIN 1 85 - -
Vra3g0947 85 ProSiteProfiles EF-hand calcium-binding domain profile. 45 77 IPR002048 GO:0005509
Vra3g0947 85 ProSitePatterns EF-hand calcium-binding domain. 20 32 IPR018247 -
Vra3g0947 85 Pfam EF-hand domain pair 14 71 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0947 Vra-Chr3 9508012 9508351 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0947 5 85 EF-hand Containing Proteins AT5G17480 71.605 2.45e-37 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0947 K13448 - gmx:100776519 149.828
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0947 3 9508012 9508351 Vra6g0710 6 6707379 6708240 PCT