Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0684 ATGGTTCAATGCTCTAACAAGGATATTGACACAAGCGCATCTCAACTAAGTTGGTGGTATGTAGATATATCTTATCAAGAACTCAAGAAGGGAACTTACAAAGTGAAAAACTCAGATGAAACTTTCATTTGTCCATACTGTCCTGAGAGGAAACAAGATTATAAGTACAGGGAACTCCTTAATCATGCTTCTGGGGTTGGTCGGAGTAGTTCAGAAAAGAGAACAGCAAAAGAGAAGGCCAATCATCTGGCTTTAGTGAAATATTTGGAAAAGGATCTGGCTTATCTGGATGGCACCTCAAAACCTGCAGATAAAGGTGTCAAATTATTCAGCACAGGAGAAACAGTAATGTCTCAGTGCCCTAACAAGGATACTGATACATCTCAAATAAGTTGGTGGTATGTAGATACATCTTACGAAGAACTCAAGAAGGGAAGTTACAATGTAAAAACCTCAGATGTGACTTTCATCTGTCCATACTGCCCTAGGAGAAAACAGGATTATTTGTACAGGGAACTCCTAGAGCATGCATATATGGTGGGTCGGAGTAGTTCTGAAAAGAAAAGTGCAAGAGAGAGAGCCAATCATCTTGCGTTAGTGAAATATTTGGAAAATGATCTTATTATTGTGGATTGCATGTCAGAGCCTGTTGATAAAGGTACCAACTTAGGACAACCTGAAATAGCTCAATGCTCTAACAAGGAGACTGGTGTGAGTGCATCTCCAGCATCTCCTACAATAAACTGGTGGTATGTGGATAAGTTTTACAAAGAACTCAAAAAGGGAAATCATATTGTGCAATCCTCAGATGAGACTTTTTCTTGTCCATACTGCCCTAAAAAGAGAAAACAGGATTATGTGTACAGGGAACTTCTTGACCACGCTTCTGGGGTGGGTCAGAGTACTTCACAAAAGAGAAATGTCCGAGAGAAGGCTACTCATCTGGCCTTGATGAAATATTTGAAAAATGATCTCATGCACATGAGTGATCCATCAAAATCTGTAAATGAAGGAACCATAATAAGTCCAGGAGAAACTGCAATCAGTTGCTGCTCTGACAAAGATAGCAATATGAGTTCATCTCAGATGGGGCGGTATGTAGATAAATTTTATGAAGAACTCAAAATGGGAAGACACTGTGTGAAAACCTCGGATGAGACTTTCACATGCCCATACTGCCCTAATAAAAAGATAAACCGGGATTATGTGTACAGGGAAATCCTTGAACATGCTTCTGGGGTGGGTCAGAGTAGATCACAAAAAAGAAGTTTCATTGAAAGGGCCAATCATCTGGCTTTAGAAAAATATTTGAAAAAGGATGTTATGAATGTGGGTGCTTCATTTCCATCAAAACCTATGGATCAAGGCACAGTAACAGCAACCCCAGGAGAAACCATGATGGTTCACTACTCTTATAAAGATAATAATATAAGGGCAACTCAAATAAGTGGGTGGTATGTGCATAAATCCTATGAAGCACTCAAAAAGGGAAGTCACATTGTGAAAACCTCTGAAATGACTTTCTCATGTCCATACTGCCCTAATAAAAAGAGAAAGCGGGATTATGTGTATAGGGAAATCCTTGAACATGCTTCTGGGGTGGGTCAGAGTAGCTCACAAAAGAGAAGTGCCACTGAAAAGGCTAATCATTTGGCTTTAATGAAATATTTGGAAAAGGATCTTATGAATGTGGATGGTACACCAAAAACTGCAGATGCAGGCAATATCCTTTTTGAGGAGCAGTTTGTGTGGCCATGGACTGGGATATTAGTTAATATTCCTACTGGACAGACAGAAGATGGACGTTGTGTTGGGGAAACTGGTTCCAAGTTGAGGGATGAACACCGAATCAGGGGATTTAATCCTTGTAGAGTCCGGATTCTTTCAGATATCCGGGGTCACTCTGGAACTGCAGTTATGGAATTCAATAAAGATTGGACAGGTTTAGCTAATGCTTTGGCATTTGAAAGAGCATATGAATTAGATCATCGAGGGAAAAAGGACTGGTTTGCTAATACTGAGCAAAAGTCTGGTATTTATGCATGGATTGCTCGACCTGATGACTACGAGATGAACAATATCATTGGGGAACAACTGCAGAAGATGGGAGATATCCAAACAATATCTGAGCTCATGAAAGAAGAAGCTCGTATACATGATAAACTTGTTTCCTGCTTGAACAATACTCTTCAGGTCAAGAAGAAGCGGTTAGTGGAGATGGAAGTAAAATACAATGAGACTTCACGTCGCTTGGAAATTGTAATGGAGGAAATAGATAAGCTCACTCAAGACCACAATCAAGAGATGAAGAAAATACAATCAAGTGCAACTCAGCACTTCCAGAATATTTTTAGTGGTCATGAAAGGCTTAAGTTGCAGCTGGAATCTCAGAAAAGAGAGCTCGAGCTGCGGAGAATTGAACTGGAAAAACGTGAAGCACATAATGAAAGTGAAAGAACGAAGTTGGAAGAAGAGATTATGGAGAATGCATTGAAAAATAGCTCTTTGGAAATGGCTGTTCTGGAGCAACAAAAGGCTGGTGAAAATATTTGGAAACTGGCTGCAGATCAAAAGCGGCAAAAAGAACAGCTTCGTCATAAAATCATCAGGCTTGAAAAACAACTGGAAGTGAAGCAAAAACTAGAATTGGAGATTCAACAACTGAAAGGAAAATTAAATGTCATGCAATACATTGAAGAAGATGAAGACTCAGAAGTCCTGAATAAGGTGAATGCCTTACACACGGATTTAAGAGAGAAGGAACAGTCACTACGAGACCTAGATGCCCTGAACCAGACACTAATTATTAAAGAGCGTCAGAGCAATGATGAGCTACAAGAAGCTCGAAAAGTATTGATTAATGGCATTAAAGAGATATCTTGCCGTGCTGGTGTTGGTGTGAAGAGAATGGGGGAGCTTGATATTAGACCATTCCTTGAAGCTATGAAGAAAAAATACAATGATGAGGATGCAGAAGAAAGAGCTTCAGAACTGTGTTCATTGTGGGACGAGTATATAAAGGACCCAGGGTGGCATCCATTTAAAATTACCATAATTGAAGGGAAAGATCAGGAAATCATAGACAATGAAGATGAAAAGTTGAAAGCACTGAAAAATGAGTTGGGTGAAGGAGTCTACAAAGCTGTGGTGACAGCTTTGACAGAGATCAATGCATATAATCCTAGTGGGAGGTATACAACCTCTGAATTATGGAATTACGAAGAGGGAAAGAGAGCTACCTTGCAAGAAGGAGTAAAATTGTTATTGATGCAATATAAACTATCTAAACAGAAAAGAGGGACGGTGTAA 3309 0.3956 MVQCSNKDIDTSASQLSWWYVDISYQELKKGTYKVKNSDETFICPYCPERKQDYKYRELLNHASGVGRSSSEKRTAKEKANHLALVKYLEKDLAYLDGTSKPADKGVKLFSTGETVMSQCPNKDTDTSQISWWYVDTSYEELKKGSYNVKTSDVTFICPYCPRRKQDYLYRELLEHAYMVGRSSSEKKSARERANHLALVKYLENDLIIVDCMSEPVDKGTNLGQPEIAQCSNKETGVSASPASPTINWWYVDKFYKELKKGNHIVQSSDETFSCPYCPKKRKQDYVYRELLDHASGVGQSTSQKRNVREKATHLALMKYLKNDLMHMSDPSKSVNEGTIISPGETAISCCSDKDSNMSSSQMGRYVDKFYEELKMGRHCVKTSDETFTCPYCPNKKINRDYVYREILEHASGVGQSRSQKRSFIERANHLALEKYLKKDVMNVGASFPSKPMDQGTVTATPGETMMVHYSYKDNNIRATQISGWYVHKSYEALKKGSHIVKTSEMTFSCPYCPNKKRKRDYVYREILEHASGVGQSSSQKRSATEKANHLALMKYLEKDLMNVDGTPKTADAGNILFEEQFVWPWTGILVNIPTGQTEDGRCVGETGSKLRDEHRIRGFNPCRVRILSDIRGHSGTAVMEFNKDWTGLANALAFERAYELDHRGKKDWFANTEQKSGIYAWIARPDDYEMNNIIGEQLQKMGDIQTISELMKEEARIHDKLVSCLNNTLQVKKKRLVEMEVKYNETSRRLEIVMEEIDKLTQDHNQEMKKIQSSATQHFQNIFSGHERLKLQLESQKRELELRRIELEKREAHNESERTKLEEEIMENALKNSSLEMAVLEQQKAGENIWKLAADQKRQKEQLRHKIIRLEKQLEVKQKLELEIQQLKGKLNVMQYIEEDEDSEVLNKVNALHTDLREKEQSLRDLDALNQTLIIKERQSNDELQEARKVLINGIKEISCRAGVGVKRMGELDIRPFLEAMKKKYNDEDAEERASELCSLWDEYIKDPGWHPFKITIIEGKDQEIIDNEDEKLKALKNELGEGVYKAVVTALTEINAYNPSGRYTTSELWNYEEGKRATLQEGVKLLLMQYKLSKQKRGTV* 1103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0684 1102 Pfam XH domain 968 1098 IPR005379 -
Vra6g0684 1102 Gene3D XS domain 578 745 IPR038588 -
Vra6g0684 1102 PANTHER XS DOMAIN-CONTAINING PROTEIN-RELATED 50 110 - -
Vra6g0684 1102 PANTHER XS DOMAIN-CONTAINING PROTEIN-RELATED 517 1101 - -
Vra6g0684 1102 PANTHER XS DOMAIN-CONTAINING PROTEIN-RELATED 117 165 - -
Vra6g0684 1102 PANTHER XS DOMAIN-CONTAINING PROTEIN-RELATED 164 220 - -
Vra6g0684 1102 PANTHER XS DOMAIN-CONTAINING PROTEIN-RELATED 399 455 - -
Vra6g0684 1102 PANTHER XS DOMAIN-CONTAINING PROTEIN-RELATED 229 280 - -
Vra6g0684 1102 PANTHER XS DOMAIN-CONTAINING PROTEIN-RELATED 1 51 - -
Vra6g0684 1102 PANTHER XS DOMAIN-CONTAINING PROTEIN-RELATED 467 516 - -
Vra6g0684 1102 PANTHER XS DOMAIN-CONTAINING PROTEIN-RELATED 350 397 - -
Vra6g0684 1102 PANTHER XS DOMAIN-CONTAINING PROTEIN-RELATED 281 338 - -
Vra6g0684 1102 Pfam XS zinc finger domain 390 433 IPR005381 GO:0031047
Vra6g0684 1102 Pfam XS zinc finger domain 158 200 IPR005381 GO:0031047
Vra6g0684 1102 Pfam XS zinc finger domain 275 317 IPR005381 GO:0031047
Vra6g0684 1102 Pfam XS zinc finger domain 44 86 IPR005381 GO:0031047
Vra6g0684 1102 Pfam XS zinc finger domain 510 553 IPR005381 GO:0031047
Vra6g0684 1102 PANTHER RIBONUCLEASE P SUBUNIT P38 399 455 IPR045177 GO:0080188
Vra6g0684 1102 PANTHER RIBONUCLEASE P SUBUNIT P38 229 280 IPR045177 GO:0080188
Vra6g0684 1102 PANTHER RIBONUCLEASE P SUBUNIT P38 50 110 IPR045177 GO:0080188
Vra6g0684 1102 PANTHER RIBONUCLEASE P SUBUNIT P38 1 51 IPR045177 GO:0080188
Vra6g0684 1102 PANTHER RIBONUCLEASE P SUBUNIT P38 281 338 IPR045177 GO:0080188
Vra6g0684 1102 PANTHER RIBONUCLEASE P SUBUNIT P38 517 1101 IPR045177 GO:0080188
Vra6g0684 1102 PANTHER RIBONUCLEASE P SUBUNIT P38 350 397 IPR045177 GO:0080188
Vra6g0684 1102 PANTHER RIBONUCLEASE P SUBUNIT P38 117 165 IPR045177 GO:0080188
Vra6g0684 1102 PANTHER RIBONUCLEASE P SUBUNIT P38 467 516 IPR045177 GO:0080188
Vra6g0684 1102 PANTHER RIBONUCLEASE P SUBUNIT P38 164 220 IPR045177 GO:0080188
Vra6g0684 1102 Coils Coil 787 844 - -
Vra6g0684 1102 Coils Coil 737 771 - -
Vra6g0684 1102 Pfam XS domain 579 690 IPR005380 GO:0031047
Vra6g0684 1102 Coils Coil 854 898 - -
Vra6g0684 1102 CDD RRM_like_XS 582 689 IPR005380 GO:0031047
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0684 Vra-Chr6 6490944 6499577 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0684 - - gmx:100790814 1841.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0684 6 6490944 6499577 Vra6g0684 6 6490944 6499577 ECH
Vra3g0959 3 9620203 9626300 Vra6g0684 6 6490944 6499577 PCT