Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0959 ATGGCTCAAAGCAGCTCTGATGAGGATACTGATATCAGTGAATCTGAAATCAGTGAGTACGAAGATAAATCCTATGAAGAACTGAAAAGTGGAAGTCAGAATTTAAAAACATCGGATGAGAGTTTCACTTGTCCGTATTGCCCTAAAAAGAGAAAACGGGATTATTTATACAAGGAGCTCCTTCAACATGCTTCTGGGGTGGGTCAGAGTAGTTCGCAAAAGAGGAAAGCTAGAGACAAAGCTAATCATTTGGCTTTAGTGAAATATTTGGAAAATGATCTCATGAATGTAGATGTTCCATCAAATGATTCAAAACCGGAAGATGAAAATGATTCTTCTGTTAATTCTAATGATCAGTTTGTGTGGCCTTGGATTGGAGTTGTAGTTAATATTCCAACCAGACGGACAGAAGATGGACGTTGTGTTGGCGAGAGCGGTTCCAGGCTGAGGGATGAGTATAGAAGCAGGGGTTTCAATCCAGTTAGAGTCAATCCTTTGTGGAATTTCCGGGGTCACTCTGGAACTGCTCTTGTGGAGTTCAATAAAAGCTGGCCAGGCTTAGATAATGCAATGGCATTTGAAAGAGCATATGAATTAGATCATCATGGGAAAAAAGATTGGTTTGCTAATTGTGGGCAGAAGTCTGGTCTTTATGCATGGGTTGCCCGGGCGGATGACTACAAAATGAACAGCATTTATGGAGAATATCTGCGCAAGATGGGTGATGTCAAAACCATATCTGAGCTCATGGAAGAAGAAGCTCGAAGGCAAGATAAACTTGTATCCAATTTGAATAACATTATTCAGGTCAAGAACAAGCACATAAAAGAGATTGAAGTGAGATACCATGAAACTACACACAAAATGAACCTTGCTATGATGGAAAAAGATAATCTCATTCAATCTTACAATGAAGAGATACAAAAAATACAGTCAACTGCCAGGGATCACTTCCAGAAGATTTTTACTGATCACGAAAAGCTCAAAACGCAACTGGAGTCTCAGAAAAATGAGCTTGAGTTACGGAAAATTGAATTAGAAAAACGTGAGGCACACAATGAAAGTGAAAGAAAAAAGTTGGCGGAAGAAATTGAGGAGAATGCAACAAAAAATAGTTCTCTTCAGATGGCTGCTATTGAGCAAAAGAAAGCAGATGAAAATGTTATGAAACTGGCTGAAGATCAAAAGAGGCAAAAAGAGCAACTCCATGCTAAAATCATTCAGCTTCAGAAACAACTTGATATGAAACAAGAACTGGAGTTGGAGATTCAGCAATTAAAAGGATCTTTAAGTGTGTTGAAGCACATGGAAGATGACGAAGATGTTGAAATTCTGAAGAAAGTAGATAATTTACAAAAGGATTTAAGAGACAAGCAACAATCACTTCAAGACCTTGATGCACTTAATCAAACACTAATAATTAAAGAGCGCGAGAGTAATGATGAGCTGCAGGAAGCTCGACAAGCATTGGTTGATGGAGTTAAAGAGTTACAACCTCTTGGAAATATTCGTTTGAAGAGAATGGGGGAACTTGACACAAGTCCATTCCTAGAGGCAATGAAGAAAAAATACAATGAAGAGGATGCTGAAGAGAGAGCTTCAGAACTGTGCTCGTTGTGGGAAGAGTATCTGAAGGACCCAGATTGGCATCCACTCAAAGTTATCATGGTTGATGGGAGAGAAAAGGAAATTATTAAAGATGACGATGAAAAGCTGAACGGGTTGAAAAATGACCTGGGTGAAGGCGCATATAAAGCAGTGGTGGAGGCATTGCTAGAAATTAATGAACATAATCCTAGTGGCCGGTACTTAACCTCAGTATTATGGAACTACAAACAAGGAAGGAGAGCAACTCTTAAAGAAGGAGTGCAATTTCTGTTAAATTATTGGAAAAAACGCAAGAGGGGAACGACATGA 1917 0.3902 MAQSSSDEDTDISESEISEYEDKSYEELKSGSQNLKTSDESFTCPYCPKKRKRDYLYKELLQHASGVGQSSSQKRKARDKANHLALVKYLENDLMNVDVPSNDSKPEDENDSSVNSNDQFVWPWIGVVVNIPTRRTEDGRCVGESGSRLRDEYRSRGFNPVRVNPLWNFRGHSGTALVEFNKSWPGLDNAMAFERAYELDHHGKKDWFANCGQKSGLYAWVARADDYKMNSIYGEYLRKMGDVKTISELMEEEARRQDKLVSNLNNIIQVKNKHIKEIEVRYHETTHKMNLAMMEKDNLIQSYNEEIQKIQSTARDHFQKIFTDHEKLKTQLESQKNELELRKIELEKREAHNESERKKLAEEIEENATKNSSLQMAAIEQKKADENVMKLAEDQKRQKEQLHAKIIQLQKQLDMKQELELEIQQLKGSLSVLKHMEDDEDVEILKKVDNLQKDLRDKQQSLQDLDALNQTLIIKERESNDELQEARQALVDGVKELQPLGNIRLKRMGELDTSPFLEAMKKKYNEEDAEERASELCSLWEEYLKDPDWHPLKVIMVDGREKEIIKDDDEKLNGLKNDLGEGAYKAVVEALLEINEHNPSGRYLTSVLWNYKQGRRATLKEGVQFLLNYWKKRKRGTT* 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0959 638 Pfam XH domain 506 635 IPR005379 -
Vra3g0959 638 CDD RRM_like_XS 120 227 IPR005380 GO:0031047
Vra3g0959 638 Coils Coil 322 366 - -
Vra3g0959 638 MobiDBLite consensus disorder prediction 96 115 - -
Vra3g0959 638 Pfam XS domain 118 228 IPR005380 GO:0031047
Vra3g0959 638 Gene3D XS domain 112 282 IPR038588 -
Vra3g0959 638 Coils Coil 293 320 - -
Vra3g0959 638 Coils Coil 392 436 - -
Vra3g0959 638 MobiDBLite consensus disorder prediction 1 46 - -
Vra3g0959 638 PANTHER XS DOMAIN-CONTAINING PROTEIN-RELATED 50 637 - -
Vra3g0959 638 PANTHER XS DOMAIN-CONTAINING PROTEIN-RELATED 5 50 - -
Vra3g0959 638 PANTHER RIBONUCLEASE P SUBUNIT P38 5 50 IPR045177 GO:0080188
Vra3g0959 638 PANTHER RIBONUCLEASE P SUBUNIT P38 50 637 IPR045177 GO:0080188
Vra3g0959 638 Coils Coil 448 468 - -
Vra3g0959 638 Pfam XS zinc finger domain 44 87 IPR005381 GO:0031047
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0959 Vra-Chr3 9620203 9626300 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0959 - - gmx:102665742 1139.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0959 3 9620203 9626300 Vra6g0684 6 6490944 6499577 PCT