Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0681 ATGCCTTTTATTTCCAGCATTCAGCGTCAAACCGATTTCAACCTCTTCGATTCCAACACTCCCATTGTCATAGACAATGGCGCCTCCTATTTCCGCATAGGTTGGGCCGGAGAGCCCGAACCTCGTGTTATTTTTCGCAACATTGTGCAAAGGCCACGCCATAAAGTAACCGGAGAGACAGTCACCATTGTGGGTGACCATGATCCTGCCTTACTGAAATACTTTGACTGCACTCGCTCTGGGCCACGTTCTGCGTTTGACAATAATGTTGTCTACCAGTTTGAAACGATGGAATACATTCTTGATTTTGGATTTGACCGGATGGGTGCAACTACTGAGATTGATCATCCTGTCCTGATCACCGAATGTGTATGCAACCCAGTTCAATCTCGTAGTAAAATGGCAGAACTTCTTTTTGAGACTTACGGAGTTCCATCAATTGCTTTTGGTGTTGACGTGGCATTCAGCTACAAATACAATCAACAACAAGGAATTTGTGCTAAAGACGGTCTTGCTTTGTGTCCTGGATTCAACACAACCCATGTGATTCCGTTTGTAGACGGGGAGCCTGTGTATGAAGGATGCTGTCGTACTAATGTTGGTGGATTTCATGTGACTAATCATTTGAAGCAACTCCTTTCACTTAAATATCCATATCATTTGACTAGATTTACATGGGAAAAGGTTGAAGACCTGAAGATGGAACATTGTTACATTGCATCAAATTATGCCTCGGAAGCTAGTTTGTTTCAGAAAGAACCTGAGCAAGCCGAAGCAAAAACCAGATGTTGGCAACTCCCTTGGGTTCCACCGCCTACAGACGAACCTCCTTCTGAGGAAGAAATCGCAAGAAAGGCAGCAATTAAAGAGAAACAAGGTCAAAGGCTTCGAGAAATGGCTGAGGCAAAGAGGTCTTCTAAAATTAATGAACTGGAAAATGAATTGCATGGTTTGGAGTTTCTTTTACATCAGCTTGAACAAGTGGATGAGAGTGAGGTACTATCATTCCTGTCAGAAACTGGCTATGTCAATAGGCAGGAGATAGAGTCTGCACGAAATAAGGTTATGCAATCATTACGGAAAGCAAAAGGTGAACCAAAGAATGAGCAAGCTGAAACTGAAAAGGACGATCTTGGCACTAGCGAGAAGTATTCTCTTATAAATATTCCTGACGACATGTTGACTGAAGAACAGCTCAATGAAAAGAAGAAACAGTTGTCACTCAAATCTATGGCTGATGGGAGGCAGCGATTAAAACAGAAGCGCTATGAAGAGGAATTGGAACGAGAGAGAAAACAACAGCTAGAGGAGGAGAAACGCCTAGAGAACCCGGACCTTTATTTGGAGCAATTACATGCTAAATACAAAGACCTTTCAGAAAGAGTTGACCAACAAAAACGACTTAAGACAAACGGAGGCCATTCAAACACAAATAATGTGTCCGGTGGTATTGGCCGTGGTGAAAGACTGAATGCTGCTCAGAGGGAAAGAATGCGTCTCCTGACAACTGCAGCTTTTGACCGTGGTAAGGGTGAAGATACATTTGGTGCTAGAGATGAAGATTGGCAGCTTTACAAATTGATGAGCAAAGATTATGGTAACGATGATGATGAAGAACCTGATGAAGATGAAACAGAGCTGGCCCGCATATCTTCTAGGCTACAGGACCTGGATCCAACATTTATACCCAAGTTAGAAGCCGGCACCAGTCAACCTGCTGAGGTGCCACGTATGCGTCCTCTGACCAAAGAAGATTTTCAAATTGTTCTTGGGGTCGAAAGATTTAGATGTCCTGAAATACTGTTTAATCCAAACTGGATTGGGGTTGATCAGGTAGGACTAGACGAGATGGCTGATGTCTCAATAAGGAGGTTACCATACAAGGATGAAACCTTGGAACAGAGACTGACTAGTTCCATACTTGTTACTGGTGGAAGTTCTCTTTTCCCTGGTATAGTTGAACGTCTGGAAGCTGGAATTCGGATGATTAGACCATGTGGCTCACCTATAAAAATAGTAAGAGCATTGGATCCTGTCATGGATGCATGGCGTGGTGCTGCTACCTTCGCCTCAGACTCACAGTTCCATATGCAAACTTTCAATAGGCAGGATTATTATGAAAAGGGTGAAGATTGGCTTCGCAGGTATCAACTGCGGTATACATTGTAA 2169 0.432 MPFISSIQRQTDFNLFDSNTPIVIDNGASYFRIGWAGEPEPRVIFRNIVQRPRHKVTGETVTIVGDHDPALLKYFDCTRSGPRSAFDNNVVYQFETMEYILDFGFDRMGATTEIDHPVLITECVCNPVQSRSKMAELLFETYGVPSIAFGVDVAFSYKYNQQQGICAKDGLALCPGFNTTHVIPFVDGEPVYEGCCRTNVGGFHVTNHLKQLLSLKYPYHLTRFTWEKVEDLKMEHCYIASNYASEASLFQKEPEQAEAKTRCWQLPWVPPPTDEPPSEEEIARKAAIKEKQGQRLREMAEAKRSSKINELENELHGLEFLLHQLEQVDESEVLSFLSETGYVNRQEIESARNKVMQSLRKAKGEPKNEQAETEKDDLGTSEKYSLINIPDDMLTEEQLNEKKKQLSLKSMADGRQRLKQKRYEEELERERKQQLEEEKRLENPDLYLEQLHAKYKDLSERVDQQKRLKTNGGHSNTNNVSGGIGRGERLNAAQRERMRLLTTAAFDRGKGEDTFGARDEDWQLYKLMSKDYGNDDDEEPDEDETELARISSRLQDLDPTFIPKLEAGTSQPAEVPRMRPLTKEDFQIVLGVERFRCPEILFNPNWIGVDQVGLDEMADVSIRRLPYKDETLEQRLTSSILVTGGSSLFPGIVERLEAGIRMIRPCGSPIKIVRALDPVMDAWRGAATFASDSQFHMQTFNRQDYYEKGEDWLRRYQLRYTL* 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0681 722 Gene3D Actin; Chain A, domain 4 202 270 - -
Vra6g0681 722 PANTHER ACTIN 18 714 IPR004000 -
Vra6g0681 722 MobiDBLite consensus disorder prediction 357 378 - -
Vra6g0681 722 SUPERFAMILY Actin-like ATPase domain 169 715 IPR043129 -
Vra6g0681 722 Gene3D - 10 169 - -
Vra6g0681 722 Pfam Actin 587 715 IPR004000 -
Vra6g0681 722 Pfam Actin 17 267 IPR004000 -
Vra6g0681 722 SMART actin_3 19 718 IPR004000 -
Vra6g0681 722 Gene3D - 588 677 - -
Vra6g0681 722 SUPERFAMILY Actin-like ATPase domain 17 157 IPR043129 -
Vra6g0681 722 Coils Coil 418 444 - -
Vra6g0681 722 Coils Coil 448 468 - -
Vra6g0681 722 MobiDBLite consensus disorder prediction 402 425 - -
Vra6g0681 722 PANTHER ACTIN-RELATED PROTEIN 5 18 714 IPR027664 -
Vra6g0681 722 Coils Coil 308 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0681 Vra-Chr6 6463105 6469578 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0681 588 715 Miscellaneous Gene Families AT2G42100 32.812 2.77e-16 79.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0681 K11672 - gmx:100804305 1266.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0681 6 6463105 6469578 Vra6g0681 6 6463105 6469578 ECH
Vra3g0962 3 9653638 9658861 Vra6g0681 6 6463105 6469578 PCT