Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0962 ATGCCATTCATCTCCAAAATTCAGCGCCAATCTGATTACACCCTCTTCAGCTCCGCCACTCCCATCGTCATCGACAATGGGGCCTCCTATTTCCGTATTGGATGGGCTGGAGAGACTCAACCTCGTGTTGTTTTCCGCAGCATTGTCCAACGGCCACGCCACAAAGCCACTGGAGAAATTGTCACTATTGTTGGTGACCATGATCCAGCATTAATGAAATACTTTGACTGTAGTCGCACTGGACCCCGCTCAGCGTTTGACAGCAATGTAGTTTACCAATTTGAAATGATGGAATATATTTTGGACTTTGGATTTGACCGGTTGGGAGCAACAGGATCAGAGATTGATCATCCTGTCCTGATCACTGAATGTGTATGCAACCCAATTCAGTCTCGTAGTAAAATGGCAGAACTTCTTTTTGAGACATATGGAGTTCCATCTATAGCCTTTGGTGTTGATGCGGCATTCAGCTACAAATATAATCAACAACATGGTGTTTGTAATAAAGATGGCCTTGCTTTGTGTCCTGGATTCAATACGACTCATGTGATTCCGTTTGTAGATGGGGAGCCTATATATAAAGGATGTTGCCGAACCAATGTTGGTGGGTTCCATGTGACTGATTATTTAAAACAACTTCTTTCACTTAAATATCCTTATCATATGGCTAGATTTACATGGGAAAAGGTTGACGACCTGAAGATGGAACATTGTTATATTGCACCAGATTATGCTTCTGAAGTTCGACTTTTTCAGAAAAAATCTAAGGAGGCTAAAGAAAAAACCAGATGTTGGCAGCTCCCTTGGGTTCCACCCCCTACGGAGGAGCCTCCTTCTGAAGAAGAGATTGCTAGAAAGGCAGCAATAAGAGAGAGACAGGGTCAAAGATTACGTGAAATGGCAGAGGCAAAGAGGTCCTCTAGAATAAACGAATTGGAAAATGAATTGCATGGTTTGGAATTTCTTCTAAAACAGCTTGAACAAGTTGAAGACAGTGATATTCCATCTTTCCTAGCAGAGACTGGTTATGTCTCTAGGCAGGAGATAGAATCTGCCCGCATTAAAGTTACTCAATCTTTACGTAAAGCAAAAGGTGAACCAAAGAGTGAACAAGCTGAAACCGAAAAAGCTGACTCTGGCATTAATGAAAAGTATTCTCTTATAAACATCCCTGATGACATGCTCTCCCCTGAACAGCTAGTTGAAAAAAAGAAACAGCTGTTACTCAAATCCATGTCAGATGGACGACAGCGAATGAAGCAGAAGCGTTATGAAGAGGAATTGGAGCGAGAAAGGAAACAACAGTTAGAGGAGGAAAAACGCCTAGAGAACCCAGAGCTTTACTTGGAACAATTGCGTGCCAAGTACAAAGACCTTTCAGAGAAAGTTGACCAGAGAAAACGGCTCAAGACAAACGGAGATCATTCCAATGGAAATAACTTGTCCGGTGGCATTGGTCGTGGTGAGAGACTCAGTACTGCTCAGAGGGAGAGAATGCGGCTCTTAACAACTGCTGCATTTGATCGCGGTAAGGGTGAAGATACATTTGGTGCCAAAGATGAAGATTGGCAACTTTACAAATTAATGAGTAAAGATAATGATGATGGTGACGACGGACCAGATGAGGATGACACTGAGCTAGCTCGCATCTCTTCCAAGCTGCAGGACTTGGATCCAACATTCGTGCCGAAGCCAGAAACTGGTAGCTCTCAACCTGCTGAGGCGTCACGTGTTCGTCCTTTAACCAAAGAAGATTTTCAAATTGTTTTGGGTGTGGAAAGGTTCCGATGCCCTGAAATTTTGTTCAATCCAAACTGGATCGCAGTTGATCAAGCAGGGCTGGACGAGATGGCTGGGGTGTCAATAAGAAGGTTATCGTGTAAGGATGAAGAGCTGGAAAAGAGACTGACAAACTCCATACTTGTGACTGGTGGAAGTTCTATTTTCCCGGGCATGATTGAACGGCTTGAAGCCGGAATTAGGATGATTCGACCATGTGGATCACCCATTAAGGTTGTCAGAGCATTGGATCCTATTATGGATGCATGGCGTGGTGCTGCTGCATATGCAACAATCCCACTATTCCATACTCAAACCTTCAGTAGGATGGACTATTTTGAAAAGGGTGAAGATTGCCTCCGCAGTTATCAACTAAAATATTCATTGTAA 2169 0.4334 MPFISKIQRQSDYTLFSSATPIVIDNGASYFRIGWAGETQPRVVFRSIVQRPRHKATGEIVTIVGDHDPALMKYFDCSRTGPRSAFDSNVVYQFEMMEYILDFGFDRLGATGSEIDHPVLITECVCNPIQSRSKMAELLFETYGVPSIAFGVDAAFSYKYNQQHGVCNKDGLALCPGFNTTHVIPFVDGEPIYKGCCRTNVGGFHVTDYLKQLLSLKYPYHMARFTWEKVDDLKMEHCYIAPDYASEVRLFQKKSKEAKEKTRCWQLPWVPPPTEEPPSEEEIARKAAIRERQGQRLREMAEAKRSSRINELENELHGLEFLLKQLEQVEDSDIPSFLAETGYVSRQEIESARIKVTQSLRKAKGEPKSEQAETEKADSGINEKYSLINIPDDMLSPEQLVEKKKQLLLKSMSDGRQRMKQKRYEEELERERKQQLEEEKRLENPELYLEQLRAKYKDLSEKVDQRKRLKTNGDHSNGNNLSGGIGRGERLSTAQRERMRLLTTAAFDRGKGEDTFGAKDEDWQLYKLMSKDNDDGDDGPDEDDTELARISSKLQDLDPTFVPKPETGSSQPAEASRVRPLTKEDFQIVLGVERFRCPEILFNPNWIAVDQAGLDEMAGVSIRRLSCKDEELEKRLTNSILVTGGSSIFPGMIERLEAGIRMIRPCGSPIKVVRALDPIMDAWRGAAAYATIPLFHTQTFSRMDYFEKGEDCLRSYQLKYSL* 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0962 722 Coils Coil 418 445 - -
Vra3g0962 722 SUPERFAMILY Actin-like ATPase domain 170 714 IPR043129 -
Vra3g0962 722 CDD NBD_sugar-kinase_HSP70_actin 22 202 - -
Vra3g0962 722 MobiDBLite consensus disorder prediction 552 578 - -
Vra3g0962 722 Gene3D - 18 170 - -
Vra3g0962 722 Gene3D Actin; Chain A, domain 4 203 290 - -
Vra3g0962 722 SMART actin_3 19 718 IPR004000 -
Vra3g0962 722 Coils Coil 449 469 - -
Vra3g0962 722 PANTHER ACTIN 13 714 IPR004000 -
Vra3g0962 722 SUPERFAMILY Actin-like ATPase domain 19 159 IPR043129 -
Vra3g0962 722 Gene3D - 588 677 - -
Vra3g0962 722 PANTHER ACTIN-RELATED PROTEIN 5 13 714 IPR027664 -
Vra3g0962 722 Coils Coil 309 329 - -
Vra3g0962 722 MobiDBLite consensus disorder prediction 466 489 - -
Vra3g0962 722 Pfam Actin 19 371 IPR004000 -
Vra3g0962 722 Pfam Actin 587 713 IPR004000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0962 Vra-Chr3 9653638 9658861 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0962 588 709 Miscellaneous Gene Families AT2G42100 32.787 3.20e-15 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0962 K11672 - gmx:100808396 1272.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0962 3 9653638 9658861 Vra6g0681 6 6463105 6469578 PCT