Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0664 ATGGGCGTGAATAATGGCGAGGAAAGTAAGGTAGGGGCATTGGAGAGGGTGCTTTACATGTGGGGTTACCTTCCCGGAGCTCTGCCGCAGAGGACGCCGCTCTTGACTCCCGTCGCTGTTAGGTTTCCGCCATGTAGTCACTCTTGGAATGACGTTTGCGGCGGTGGTTGTGGATTCGCTATTGCTATCTCTGAATCAGGGAAGCTCATCACGTGGGGCTCGACAGATGATTTAGGCCAAAGCTATGTGACTTCTGGCAAGCACGGGGAAACTCCAGAGCCTTTCCCTCTTCCAACCGAAGCATCTATTGTGAAAGCTGCAGCAGGATGGGCTCATTGTGTTGCTGTAACAGAACATGGAGAAGTTTATACATGGGGATGGAAAGAATGTATTCCCTCAGGGAGGGTATTTGGTGAACCATCGACAGGGGTAGGTCTTGAAAAAGATGTGCCAGGAAGTCATAGTCAATTATCAACAGAGCAAGTGAGCCCTCGTTCACAAGGCTCAAGATCTACTGGAGGTACTGCCTCCAATAACAGTGGAGAAGAAAGTACAAAGCGAAGGAGAGTATCTGCAACAAAGCAAACAGCTGAAAGCTCATCATCCAGCGATGATAGTCTGACTGCGTTTCCGTGTCTTGTCACACTAAATCCAGGAATAAAGATAGCTAGTGTTGCTGCCGGTGGACGCCATACACTTGCATTGTCAGGACTGGTGTGGGCTTGGGGTTATGGAGGTGAAGGGCAGCTTGGTTTGGGTTCAAGAATACGTATGGTATCCTCTCCTCATCTCGTTCCATGTACTGATTCCTCTTATTATGGTAAAGATAGATCTGCTACACTGGTTCGAGGAAGCATGGGTTCAGAGGGACAAAGTTTTAGAGTTCCTGGAAGTTACATAAAGAGAATTGCCTGTGGAGGTCGACATAGTGCAGTCATTACAGATGCTGGAGCCTTGCTTACTTTTGGTTGGGGACTCTATGGACAGTGTGGGCAAGGAAGTACCGATGATGAACTAAGCCCAACTTGTGTATCTTCCTTATTGGGTATCCACATAGAGGGGGTTGCTGCAGGACTGTGGCATACAGTCTGTACATCTGCTGATGGTGATGTGTATGCATTTGGTGGTAATCAGTTTGGACAGCTAGGAACTGGTGCCGATCAAGCTGAGCAGACTCTACCAAGACTAGTGGATTCTCCGAGTTTGGAAAATATTCATGCAAAGAATATATCGTGTGGTGCTCGTCACACTGCTTTGGTAACAGAGGGTGGAAGAGTTTTCTGCTGGGGATGGAACAAATATGGACAGCTGGGCCTTGGGGACGTCATTGACCGTAACGTTCCTTCTGAAGTCACCATTGAAGGTTGTGTTCCTAAAAATGTTGCTTGTGGTTGGTGGCATACTCTTCTTCTGGCCGAGTCCCCCACCTGA 1431 0.4829 MGVNNGEESKVGALERVLYMWGYLPGALPQRTPLLTPVAVRFPPCSHSWNDVCGGGCGFAIAISESGKLITWGSTDDLGQSYVTSGKHGETPEPFPLPTEASIVKAAAGWAHCVAVTEHGEVYTWGWKECIPSGRVFGEPSTGVGLEKDVPGSHSQLSTEQVSPRSQGSRSTGGTASNNSGEESTKRRRVSATKQTAESSSSSDDSLTAFPCLVTLNPGIKIASVAAGGRHTLALSGLVWAWGYGGEGQLGLGSRIRMVSSPHLVPCTDSSYYGKDRSATLVRGSMGSEGQSFRVPGSYIKRIACGGRHSAVITDAGALLTFGWGLYGQCGQGSTDDELSPTCVSSLLGIHIEGVAAGLWHTVCTSADGDVYAFGGNQFGQLGTGADQAEQTLPRLVDSPSLENIHAKNISCGARHTALVTEGGRVFCWGWNKYGQLGLGDVIDRNVPSEVTIEGCVPKNVACGWWHTLLLAESPT* 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0664 476 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 424 474 IPR000408 -
Vra6g0664 476 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 15 476 - -
Vra6g0664 476 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 410 420 IPR000408 -
Vra6g0664 476 PANTHER REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN 15 476 - -
Vra6g0664 476 MobiDBLite consensus disorder prediction 142 206 - -
Vra6g0664 476 Pfam Regulator of chromosome condensation (RCC1) repeat 317 364 IPR000408 -
Vra6g0664 476 Pfam Regulator of chromosome condensation (RCC1) repeat 368 419 IPR000408 -
Vra6g0664 476 Pfam Regulator of chromosome condensation (RCC1) repeat 424 471 IPR000408 -
Vra6g0664 476 Pfam Regulator of chromosome condensation (RCC1) repeat 236 313 IPR000408 -
Vra6g0664 476 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 369 423 IPR000408 -
Vra6g0664 476 MobiDBLite consensus disorder prediction 152 181 - -
Vra6g0664 476 Gene3D - 177 272 IPR009091 -
Vra6g0664 476 Gene3D - 273 476 IPR009091 -
Vra6g0664 476 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 67 119 IPR000408 -
Vra6g0664 476 PRINTS Chromosome condensation regulator RCC1 signature 103 116 IPR000408 -
Vra6g0664 476 PRINTS Chromosome condensation regulator RCC1 signature 122 138 IPR000408 -
Vra6g0664 476 PRINTS Chromosome condensation regulator RCC1 signature 358 376 IPR000408 -
Vra6g0664 476 PRINTS Chromosome condensation regulator RCC1 signature 419 440 IPR000408 -
Vra6g0664 476 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 237 316 IPR000408 -
Vra6g0664 476 SUPERFAMILY RCC1/BLIP-II 19 474 IPR009091 -
Vra6g0664 476 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 317 368 IPR000408 -
Vra6g0664 476 Pfam Regulator of chromosome condensation (RCC1) repeat 103 127 - -
Vra6g0664 476 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 303 313 IPR000408 -
Vra6g0664 476 Gene3D - 11 163 IPR009091 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0664 Vra-Chr6 6146288 6151811 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0664 - - gmx:100807837 880.552
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0664 6 6146288 6151811 Vra6g0664 6 6146288 6151811 ECH
Vra3g0991 3 9976428 9985121 Vra6g0664 6 6146288 6151811 PCT