Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0991 ATGAATGGCGAGGGGAGTGAAGCAATGCAAGTGGAGAAGGAGATGTTGGTGTACATGTGGGGTTACCTCCCCGGAGCTTTGCCGCAGAGGACGCCGCTGCTGACGCCGGTCCTCGTTAGGGTTCCGCCGTCTGGTTACTCTTGGAGTGATGTTTGCGGCGGCGGTTGTGGATTTGCCATGGCTATCTCTGAGCCCGGAAAGCTCATAACATGGGGTTCATCAGATGATTTGGGCCAAAGCTATGTTACATCTGGAAAACATGGGGAAATTCCAGAGCCTTTCCCTCTTCCAACTGAAGTGACTATTGTAAAAGCTGCAGCTGGATGGGCGCATTGTGTTGCTGTCACTGATTGTGGAGAAGTTTATACTTGGGGATGGAGGGAATGTGTTCCCTCTGGGAAGGTGTTTGGTGAATCATTAACTGGGGTGAGCCCTGAAAAGGATGTACCAGGAAGGCAAACCTTATTCTTGACGGAGCAAGTAAGCCCTCATTCTCAAGGCTCAAAGTCTACTGGAGGAACTGCTTCTAGTACCAGTGGAGAAGAAAGTACAAAGAGAAGAAGAGTGTCTTCATCAAAGCAAACAGCTGAAACCTCTTCTTCCAGTGATGATACGCTGACAGCGTTGCCGTGTCTTGTCACACTAAACCCAGGCATAAGGATAGCAAGTGTTGCTGCTGGTGGTCGCCATACCTTAGCATTGTCAGTTTCAGATATAGGACAGGTGTGGGGTTGGGGCTATGGAGGTGAAGGTCAGCTTGGTTTGGGTTCTAGAATACGAATGGTGTCCTCTCCTCATCTAGTTCCTTGTATTAATACCTCTTCTTATGGTAAAGATATGACGTTGTCACTGGCTCGAGGAAGCATGAGTTCAGAGGGACAAAATTTCAGAGTGCCAGGAACTTATATAAAGGCCATTGCCTGCGGAGGTCGACACAGTGCAGTAATAACAGATGCTGGAGCTGTGCTTACATTTGGTTGGGGACTCTATGGACAGTGTGGGCAAGGAAGTACAGATGATGAACTGAGTCCGACTTGTGTATCTTCCTTATTGGGTATTCGAATAGAGGGGGTTGCTGCAGGACTGTGGCACACTGTGTGTACATCTGCTGATGGTGATGTATATGCATTTGGTGGAAACCAGTTTGGGCAGCTGGGAACTGGCTCTGACCAAGCTGAGACTATACCAAGGCTCCTGGATTGTCCGAGCTTGGAAAATGTCAACGTTAAGAGGATATCTTGTGGGGCGCGCCACTCTGCTCTAATAACAGATACGGGAAAAGTCTTCTGCTGGGGATGGAACAAGTATGGACAGTTGGGCCTTGGGGACGTGATTGACCGTAACATCCCTTCTGAAGTCACTATCGAAGGTTGCTTAGCTAAAAACGTTGCATGTGGCTGGTGGCATACTCTTCTTCTGGCGGAGTCCCCCACCTGA 1437 0.4906 MNGEGSEAMQVEKEMLVYMWGYLPGALPQRTPLLTPVLVRVPPSGYSWSDVCGGGCGFAMAISEPGKLITWGSSDDLGQSYVTSGKHGEIPEPFPLPTEVTIVKAAAGWAHCVAVTDCGEVYTWGWRECVPSGKVFGESLTGVSPEKDVPGRQTLFLTEQVSPHSQGSKSTGGTASSTSGEESTKRRRVSSSKQTAETSSSSDDTLTALPCLVTLNPGIRIASVAAGGRHTLALSVSDIGQVWGWGYGGEGQLGLGSRIRMVSSPHLVPCINTSSYGKDMTLSLARGSMSSEGQNFRVPGTYIKAIACGGRHSAVITDAGAVLTFGWGLYGQCGQGSTDDELSPTCVSSLLGIRIEGVAAGLWHTVCTSADGDVYAFGGNQFGQLGTGSDQAETIPRLLDCPSLENVNVKRISCGARHSALITDTGKVFCWGWNKYGQLGLGDVIDRNIPSEVTIEGCLAKNVACGWWHTLLLAESPT* 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0991 478 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 10 478 - -
Vra3g0991 478 MobiDBLite consensus disorder prediction 158 180 - -
Vra3g0991 478 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 412 422 IPR000408 -
Vra3g0991 478 Gene3D - 5 198 IPR009091 -
Vra3g0991 478 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 426 476 IPR000408 -
Vra3g0991 478 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 320 371 IPR000408 -
Vra3g0991 478 PANTHER REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN 10 478 - -
Vra3g0991 478 PRINTS Chromosome condensation regulator RCC1 signature 321 337 IPR000408 -
Vra3g0991 478 PRINTS Chromosome condensation regulator RCC1 signature 355 368 IPR000408 -
Vra3g0991 478 PRINTS Chromosome condensation regulator RCC1 signature 374 390 IPR000408 -
Vra3g0991 478 PRINTS Chromosome condensation regulator RCC1 signature 426 442 IPR000408 -
Vra3g0991 478 PRINTS Chromosome condensation regulator RCC1 signature 463 478 IPR000408 -
Vra3g0991 478 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 306 316 IPR000408 -
Vra3g0991 478 Pfam Regulator of chromosome condensation (RCC1) repeat 426 473 IPR000408 -
Vra3g0991 478 Pfam Regulator of chromosome condensation (RCC1) repeat 320 367 IPR000408 -
Vra3g0991 478 Pfam Regulator of chromosome condensation (RCC1) repeat 371 422 IPR000408 -
Vra3g0991 478 Pfam Regulator of chromosome condensation (RCC1) repeat 240 316 IPR000408 -
Vra3g0991 478 Gene3D - 283 477 IPR009091 -
Vra3g0991 478 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 66 118 IPR000408 -
Vra3g0991 478 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 240 319 IPR000408 -
Vra3g0991 478 MobiDBLite consensus disorder prediction 158 204 - -
Vra3g0991 478 Gene3D - 199 282 IPR009091 -
Vra3g0991 478 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 372 425 IPR000408 -
Vra3g0991 478 SUPERFAMILY RCC1/BLIP-II 16 476 IPR009091 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0991 Vra-Chr3 9976428 9985121 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0991 - - gmx:100778841 866.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0991 3 9976428 9985121 Vra6g0664 6 6146288 6151811 PCT