Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0616 ATGGAGGATCGGGATGCCCGCCGGATGGCGACTGCTACTAAGCTATCGGATGTGGTTCTGGACTGTGTGATGCCGTACATCCATGACCCCAAGGACAGGGATGCGGTGTCGCAGGTGTGTCACCGGTGGTACGAACTCGACTCGCTCACACGGAAGCACCTCACGATTGCGCTCTGCTACACGACCACGCCTGACCGGCTCCGGAGGCGGTTCCCGCACCTAGAGTCGCTGAAGCTGAAAGGGAAGCCCCGGGCAGCTATGTTCAACCTCATACCGGAGGATTGGGGAGGTTTCGTTACACCGTGGGTTAAAGAGATCTCTCAGTACTTCGATTGCTTGAAGTCACTTCACTTTCGCCGCATGATTGTGACAGATTCTGATCTTCAGGTTCTTGCTTACTCGCGTGGTCACGTACTTCAGGCGCTCAAGCTCGATAAGTGCTCCGGATTCTCCACGGATGGCCTTTATTATATTGGTCGCTTTTGCAGGAATTTGAGAATCTTGTTGTTAGAGGAAAGCTCACTTGTTGAGAATGATGGTGACTGGCTCCATCAGCTTGCTTTGAATAATACAGTTCTGGAGACCCTAAATTTTTACTTGACTGATATTGCCAATGTCAGAATCCAGGACCTTGAACTTATAGCCAGAAATTGCCCCAACTTAAACTCAGTGAAAATTACTGATTGTGAAGTATTAGATTTGGTGAACTTCTTCCGGTATGCATCTGCTCTAGAAGAATTTTGTGGAGGTTCCTACAACGAAGAATCAGAGAAGTACGCTGCTATATCATTGCCAGCAAAATTAAGTCGTTTGGGTTTGACATATATTACAAAGAATGAAATGCCCATAGTGTTCCCTTATGCAGCCTTACTGAAAAAATTGGATCTTTTGTATGCAATGCTGGATACAGAGGACCATTGTACGTTAATCCAGAGGTGCCCCAACTTGGAAGTACTTGAGTCAAGGAACGTGATTGGAGACAGAGGATTAGAAGTGCTTGCTCGCTGTTGTAGGAAGCTTAAAAGGCTTCGGATTGAAAGAGGTGACGATGATCAAGGAATGGAGGATGAAGAAGGTGTTGTTTCACAAAGAGGACTAATTGCTTTGTCACATGGCTGTCCAGAGCTGGAATATTTGGCCGTTTATGTATCCGACATTTCAAATGCATCTCTAGAACACATTGGTACTCACTTGAAAAACCTTTGTGATTTTCGCCTTGTCTTGCTTGACCGAGAAGAGAAAATAACTGATTTGCCACTTGACAACGGAGTGAGAGCTTTACTGAGGGGTTGTGATAAGCTCAGAAGATTTGCTCTGTATCTGAGACCTGGGGGCTTGACCGATGTGGGACTGGGTTACATAGGACAATACAGCCCAAACGTGAGATGGATGCTTCTAGGGTATGTAGGAGAGACTGACGAAGGGCTGTTGGAATTCTCTAAGGGCTGCCCCAGTCTGCAGAAGCTTGAAATGAGGGGATGCTCCTTTTTTAGTGAGTATGCACTAGCTGTTGCTGCAACTCAACTAACTTCTCTGAGATACCTATGGGTTCAAGGTTATGGAGCATCTCCTTCTGGGCGTGATCTTTTGGCAATGGCTCGGCCCTATTGGAACATTGAGTTGATTCCTTCTAGACGCGTGGTTGTGAACAATCAACAGGAAGAACCTGTAGTTGTTGAGCATCCGGCTCATATTCTTGCATATTACTCCCTTGCTGGCCCAAGAACAGATTTTCCAGATACTGTTATACCTTTGGATACTGCAACATATGTTGACACTTAA 1782 0.4618 MEDRDARRMATATKLSDVVLDCVMPYIHDPKDRDAVSQVCHRWYELDSLTRKHLTIALCYTTTPDRLRRRFPHLESLKLKGKPRAAMFNLIPEDWGGFVTPWVKEISQYFDCLKSLHFRRMIVTDSDLQVLAYSRGHVLQALKLDKCSGFSTDGLYYIGRFCRNLRILLLEESSLVENDGDWLHQLALNNTVLETLNFYLTDIANVRIQDLELIARNCPNLNSVKITDCEVLDLVNFFRYASALEEFCGGSYNEESEKYAAISLPAKLSRLGLTYITKNEMPIVFPYAALLKKLDLLYAMLDTEDHCTLIQRCPNLEVLESRNVIGDRGLEVLARCCRKLKRLRIERGDDDQGMEDEEGVVSQRGLIALSHGCPELEYLAVYVSDISNASLEHIGTHLKNLCDFRLVLLDREEKITDLPLDNGVRALLRGCDKLRRFALYLRPGGLTDVGLGYIGQYSPNVRWMLLGYVGETDEGLLEFSKGCPSLQKLEMRGCSFFSEYALAVAATQLTSLRYLWVQGYGASPSGRDLLAMARPYWNIELIPSRRVVVNNQQEEPVVVEHPAHILAYYSLAGPRTDFPDTVIPLDTATYVDT* 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0616 593 Pfam F-box 13 53 IPR041567 -
Vra6g0616 593 SMART LRR_CC_2 431 457 IPR006553 -
Vra6g0616 593 SMART LRR_CC_2 136 161 IPR006553 -
Vra6g0616 593 SMART LRR_CC_2 313 336 IPR006553 -
Vra6g0616 593 SMART LRR_CC_2 218 237 IPR006553 -
Vra6g0616 593 SMART LRR_CC_2 373 397 IPR006553 -
Vra6g0616 593 SMART LRR_CC_2 483 507 IPR006553 -
Vra6g0616 593 SUPERFAMILY RNI-like 322 538 - -
Vra6g0616 593 PANTHER F-BOX/TPR REPEAT PROTEIN POF3 12 588 - -
Vra6g0616 593 Pfam Transport inhibitor response 1 protein domain 72 118 IPR041101 -
Vra6g0616 593 SUPERFAMILY RNI-like 90 402 - -
Vra6g0616 593 Gene3D - 1 51 - -
Vra6g0616 593 Gene3D Ribonuclease Inhibitor 52 589 IPR032675 -
Vra6g0616 593 PANTHER CORONATINE-INSENSITIVE PROTEIN 1 12 588 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0616 Vra-Chr6 5634676 5639749 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0616 K13463 - gmx:100793081 1116.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0616 6 5634676 5639749 Vra6g0616 6 5634676 5639749 ECH
Vra3g1023 3 10237705 10242469 Vra6g0616 6 5634676 5639749 PCT