Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g1023 ATGTCGGAGGAGCGGAACGTGCGAAAAACACGTGTGGTCGACGTGGTTCTCGACTGCGTCATACCCTACATCGACGACCCTAAGGACCGGGATGCCGTTTCCCAGGTGTGTCGACGTTGGTACGAGCTCGACTCGCTTACCCGGAAGCACGTCACCATCGCCCTCTGCTACACCACCACGCCGGCGCGGCTCCGTCGTCGCTTTCCGCACCTGGAGTCGCTTAAATTGAAGGGGAAGCCCCGCGCCGCAATGTTCAACCTGATTCCCGAGGATTGGGGAGGCCACGTCACCCCCTGGGTTGAGGAAATCTCTCAGTACTTCGATTGCCTGAAGAGCCTCCACTTCCGCCGCATGATTGTCACCGATTCCGATCTTCAGCTCCTCGCTCGCTCCCGAGGTCATGTGCTGCAGGCTCTCAAGCTTGACAAGTGCTCCGGTTTCTCCACCGATGGACTTCTCCATATTGGTCGCCTTTGCAAGAATTTGAGAGTGCTGTTTCTGGAGGAAAGTTCTATTGTTGAGAAGGACGGAGAATGGCTACACGAACTTGCTTTGAATAATACGGTTCTTGAGGATCTGAACTTTTACTTGACAGACATTGCTTGTATAAGGAATCAGGACCTTGAACTCCTGGCTAGAAATTGCCCCAACCTAGTGTCTGTGAAACTTACTGATTGTGAAATACTTGATCTTGTGAACTTCTTTAAGCATGCGTCTGCTCTGGAAGAGTTTTGTGGAGGCACCTACAACGCGGAACCAGAAAATTACTCTGCTATATCATTGCCAGCAAAGTTATGTCGATTGGGTTTAACGTATATTGGAAAGAATGAGTTGCCCATAGTGTTCTTATTTGCAGGCGTACTAAAAAAATTGGATCTCCTCTATGCAATGCTGGACACAGAAGATCATTGTACCTTAATCCGAAAGTGTCCAAATCTGGAAGTCCTTGAGACGAGGAATGTAATTGGCGATAGAGGGTTAGAAGTTCTTGGTCGTTGTTGTAGGAGGCTAAAAAGGCTTAGGATTGAAAGGGGTGATGATGATCAAGGAATGGAGGATGAAGAAGGTACTGTGTCTCATAGAGGGCTAATAGCCTTGTCACAGGGCTGTTCAGAGCTTGAATACATGGCTGTTTACGTGTCCGATATTACAAATGCATCTCTGGAACATATTGGAAATCACTTAAAAAAGCTATGCGATTTTCGCCTAGTGTTACTTGATCATGAAAAGAAAATAACTGATTTGCCACTTGACAACGGAGTGAGGGCTCTTCTAAGTGGCTGTGAGAAGCTGAGAAGATTTGCTCTATATCTGAGGCGGGGGGGTTTGACTGATGTAGGTCTTGGTTACATAGGACAGTACAGTTCAAATGTTCGATGGATGCTGCTCGGGTATGTGGGGGAGTCTGATGCAGGGCTTTTGGAATTCTCAAAGGGGTGTCCTAGTCTTCAGAAACTTGAAATGAGAGGGTGTTCTTTTTTCAGTGAGCGAGCACTTGCTGTGGCTGCAACGCGATTAACTTCTCTAAGGTACTTGTGGGTTCAAGGGTATGGCGCATCTCCATCTGGGCATGACCTTTTGGCAATGGCTCGCCCCTTTTGGAACATTGAGTTGATTCCTTCTAGAAAGGTGCCTAACCATCAGGATGAGACTGTAGTTGTTGAGCATCCAGCTCATATTCTTGCCTATTATTCTCTTGCAGGGCAGAGATCAGATTTTCCAGATACTGTTGTGCCTTTGGAAACTGCCACGCGTCTTGTTGACGCCTAG 1770 0.4774 MSEERNVRKTRVVDVVLDCVIPYIDDPKDRDAVSQVCRRWYELDSLTRKHVTIALCYTTTPARLRRRFPHLESLKLKGKPRAAMFNLIPEDWGGHVTPWVEEISQYFDCLKSLHFRRMIVTDSDLQLLARSRGHVLQALKLDKCSGFSTDGLLHIGRLCKNLRVLFLEESSIVEKDGEWLHELALNNTVLEDLNFYLTDIACIRNQDLELLARNCPNLVSVKLTDCEILDLVNFFKHASALEEFCGGTYNAEPENYSAISLPAKLCRLGLTYIGKNELPIVFLFAGVLKKLDLLYAMLDTEDHCTLIRKCPNLEVLETRNVIGDRGLEVLGRCCRRLKRLRIERGDDDQGMEDEEGTVSHRGLIALSQGCSELEYMAVYVSDITNASLEHIGNHLKKLCDFRLVLLDHEKKITDLPLDNGVRALLSGCEKLRRFALYLRRGGLTDVGLGYIGQYSSNVRWMLLGYVGESDAGLLEFSKGCPSLQKLEMRGCSFFSERALAVAATRLTSLRYLWVQGYGASPSGHDLLAMARPFWNIELIPSRKVPNHQDETVVVEHPAHILAYYSLAGQRSDFPDTVVPLETATRLVDA* 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g1023 589 Gene3D - 2 48 - -
Vra3g1023 589 SMART LRR_CC_2 480 505 IPR006553 -
Vra3g1023 589 SMART LRR_CC_2 107 131 IPR006553 -
Vra3g1023 589 SMART LRR_CC_2 428 454 IPR006553 -
Vra3g1023 589 SMART LRR_CC_2 133 158 IPR006553 -
Vra3g1023 589 SMART LRR_CC_2 370 394 IPR006553 -
Vra3g1023 589 Pfam F-box 10 50 IPR041567 -
Vra3g1023 589 SUPERFAMILY RNI-like 359 517 - -
Vra3g1023 589 PANTHER CORONATINE-INSENSITIVE PROTEIN 1 10 583 - -
Vra3g1023 589 Pfam Transport inhibitor response 1 protein domain 69 115 IPR041101 -
Vra3g1023 589 Gene3D Ribonuclease Inhibitor 49 584 IPR032675 -
Vra3g1023 589 SUPERFAMILY RNI-like 87 415 - -
Vra3g1023 589 PANTHER F-BOX/TPR REPEAT PROTEIN POF3 10 583 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g1023 Vra-Chr3 10237705 10242469 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g1023 K13463 - gmx:100779171 1079.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g1023 3 10237705 10242469 Vra6g0616 6 5634676 5639749 PCT