Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0607 ATGGTTGATCTAGATTGGCAAACAAAGATGGTTTGTTCCAACATGCCTCCCAACTCACCCAAACTCTCTCTCTTAGAAAACAACATCCCAATCCCAATCCCTACTTTGCAAATCCCCCTTCCTCAAAACGACATCACGCCAGCCTCCTCCCCGCTTTGTGCTGCCTACGACAACTACCTTCGCCTCCCCGACCTAAGAAATCTTTGGGCCTCCAACAACTTCCCCGATTGGCCCAACGAGCCCATCATAAAGCCCGCCTTACACGCCCTCGAAATCACCTTCCGCTTTCTCGCAACCGTTTTATCAGACCCCAGGCCTTACGTTAACAAGCGCGAGTGGACCCGACGCCTCGAGTCTCTCGCCGCGGCGCAGGTCCAGATCATTGCCGTGCTCTGCGAAGACGAGGAGCAAAACCCCCAGACACGTGGCAAGGCACCCGTCAGTGACGTCAACGACTTCCTCACGGGTCAAAGAAGAAGCTACAGCGAGGAGAGCTTGCTCCCACGTCTCGCCACGTGGCACAGATCCAGGGACGTGGCGAGGAGGATCCTCGCCACCGTGGAATGCGAGATGATGAGGTGCACGTACACGCTGGGTCTGGGTGAGGCCAATCTCGCGGGAAAAAAGGTTCTCCATTACGACGACGTTTGCAGGCCGACCGAGATCCGATCCCTGGAGACCACGCCGTACGATCACGTGGAGAACTACGAGAATAGGACGGTGCACGCGGCGCAGCAGATCGTGGAGTGCTGGACGCGTGCTGGGAGGAGGTTGGTGGAGAGATTGGTGGAGTCGGTGGAGAGGAGAGAGTTGGAGAAGGCGGCGAGTGAGTGCCACGCGGTGGAACGGATCTGGAAGCTTCTGGCGGAGGTTGAGGACGTGCATGTGATGATGGATCCGGAGGATTTTCTTCGGCTGAAGAAGGAATTGGGGATGGGAAGGCAAGGCGAAACGGTGGCGTTTTGCTTTAGGTCTAAGGAAGTTGTGGAGTTGGCGAGGGTGTGTAGGGATCTGAGGCAGAAGGTGCCGGAGATATTGGAGGTGGAGGTTGACCCGAAGGGTGGGCCAGGGATGATGGAGGCGGCGATGAAGGTGTACGCGGAGAAAACGAAGAAGGGGTTGGAAAAGGTTGTTGTTTTGCAGGGTATGCAAGCGATTGAGGTGGCGATGAAGAGATTCTTCTTCGCTTACAAGCAGGTTGCGTCGCTTCTGATGGGAAGCTCCGAGGCCGATGGGTTAACTCAGATATTCCTTCAACCCACCTATTTCCCTAGCTTGGATGCTGCCAAGACATTCCTCAGTTATTACTGGGAAAATAACGCCAATAATCAAACTCAAAATTTGGTAGTTAAATTAGTTAATTAA 1365 0.5443 MVDLDWQTKMVCSNMPPNSPKLSLLENNIPIPIPTLQIPLPQNDITPASSPLCAAYDNYLRLPDLRNLWASNNFPDWPNEPIIKPALHALEITFRFLATVLSDPRPYVNKREWTRRLESLAAAQVQIIAVLCEDEEQNPQTRGKAPVSDVNDFLTGQRRSYSEESLLPRLATWHRSRDVARRILATVECEMMRCTYTLGLGEANLAGKKVLHYDDVCRPTEIRSLETTPYDHVENYENRTVHAAQQIVECWTRAGRRLVERLVESVERRELEKAASECHAVERIWKLLAEVEDVHVMMDPEDFLRLKKELGMGRQGETVAFCFRSKEVVELARVCRDLRQKVPEILEVEVDPKGGPGMMEAAMKVYAEKTKKGLEKVVVLQGMQAIEVAMKRFFFAYKQVASLLMGSSEADGLTQIFLQPTYFPSLDAAKTFLSYYWENNANNQTQNLVVKLVN* 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0607 454 PANTHER NEMATODE RESISTANCE PROTEIN-LIKE HSPRO1 1 445 IPR038759 -
Vra6g0607 454 Pfam Hs1pro-1 protein C-terminus 191 439 IPR009743 -
Vra6g0607 454 SUPERFAMILY Indolic compounds 2,3-dioxygenase-like 212 433 IPR037217 GO:0019441|GO:0020037|GO:0046872
Vra6g0607 454 Gene3D - 211 316 - -
Vra6g0607 454 PANTHER NEMATODE RESISTANCE HSPRO2-LIKE PROTEIN 1 445 - -
Vra6g0607 454 Pfam Hs1pro-1 N-terminus 1 188 IPR009869 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0607 Vra-Chr6 5503989 5505671 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0607 - - gmx:100778560 684.871
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0607 6 5503989 5505671 Vra6g0607 6 5503989 5505671 ECH
Vra3g1033 3 10322721 10324480 Vra6g0607 6 5503989 5505671 PCT