Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g1033 ATGGTTGATTTACATTGGAAATCAAAGATACCTGCTTCCGACATGTCTTCCAAATCTCCAAAACTCTCCCTCCCCGCCAACTCCTTACCCTCTCTTCAACTACCCTTCCGCACCACAGACATCTCTCCCGCTCCACCTGCACTCTGTGCTGCATACGATTACTATCTCTCTCTCCCACAACTCAGAACCCTTTGGAATTCAAGAGACTTTCCCAATTGGAACAACGAACCCATTTTAAAACCTGCCCTGCAAGCTTTGGAAGTCACCTTCCGTTTTCTTTCCATTGTTTTCTCCGATCCCAGGCCTCATTCCAACCACAGGGAATGGAACCGTGTCATAGAGTCTCTCGCCATTCATCAGATTGAGATCATAGCCATGCTGTGCGAAGACGAGGAGCTCAATTCTCAGACACGTGCCACCGTCCCAACCGCTGATCTTACTGTAGATAGCTCCAACAATAGCGAGAGCCGAAGCTACAGCGAGGCCAGCCTTCTTCCGCGGCTTGCCACGTGGTACAAATCCAAGGACGTGGCGCAGAGGATTCTTCTCACCGTTGAGTGCCAAATGAGGAGGTGTAGCTATACGCTAGGTTTGGGAGAGCCGAACCTGGCGGCGAAACCGAGCCTGCTCTACGACCGCGTCTGCAGACCGAGTGAAATCCACGCGCTCAAGACTACACCCTACGACGAACGCGTGGAGAACTACGAGAACCACGCTGTGCACGCCACGCACCAGATTGCGGAGTCGTGGATCCACACTTCGCGGAAGCTTCTGGAGAGGATCGCCGATGCTATCCACTGTAAAAGGTTGGAGCAGGCGGCGGAGGACTGCCACGCGGTGGAGCGCATCTGGAAGCTTCTCGCGGAGGTGGAGGATCTTCACCTGATGATGGATCCGGACGAATTCCTGCGTTTGAAGAACCAGCTCTCGGTGCGGTCCTCGAGCGGCGAAACGGCGTCTTTCTGCTTCAGGTCAAAGGAATTGGTGGAAGTGACGAAAATGTGCAGAGATCTGAGGCACATGGTGCCGGAGATATTGGAGGTGGAGGTGGATCCGAAGGGAGGACCGAGAATTCAAGAAGCGGCGATGAAACTGTACGTCTCGAAGAGCGCGTTCGAGAAGGTTCACCTGTTGCAGGCGATGCAGGCGATAGAGGCGGCGATGAAGAGGTTCTTCTACGCGTATAAACAAGTTCTGACGGTGGTGATGGGAAGCTCGGAGGCCAACGGCAACCGAGTTGGGCTGAGTTGTGACTCGGCTGACTCGTTGACTCAGATATTCCTTGAACCGACGTATTTTCCAAGCTTGGATGCCGCCAAGACTTTCCTTGGGTACCTCTGGGATAATAACGATTACAAGTGGCCATAA 1368 0.5336 MVDLHWKSKIPASDMSSKSPKLSLPANSLPSLQLPFRTTDISPAPPALCAAYDYYLSLPQLRTLWNSRDFPNWNNEPILKPALQALEVTFRFLSIVFSDPRPHSNHREWNRVIESLAIHQIEIIAMLCEDEELNSQTRATVPTADLTVDSSNNSESRSYSEASLLPRLATWYKSKDVAQRILLTVECQMRRCSYTLGLGEPNLAAKPSLLYDRVCRPSEIHALKTTPYDERVENYENHAVHATHQIAESWIHTSRKLLERIADAIHCKRLEQAAEDCHAVERIWKLLAEVEDLHLMMDPDEFLRLKNQLSVRSSSGETASFCFRSKELVEVTKMCRDLRHMVPEILEVEVDPKGGPRIQEAAMKLYVSKSAFEKVHLLQAMQAIEAAMKRFFYAYKQVLTVVMGSSEANGNRVGLSCDSADSLTQIFLEPTYFPSLDAAKTFLGYLWDNNDYKWP* 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g1033 455 Pfam Hs1pro-1 protein C-terminus 189 449 IPR009743 -
Vra3g1033 455 Gene3D - 209 442 - -
Vra3g1033 455 Pfam Hs1pro-1 N-terminus 1 186 IPR009869 GO:0006952
Vra3g1033 455 MobiDBLite consensus disorder prediction 1 22 - -
Vra3g1033 455 PANTHER NEMATODE RESISTANCE HSPRO2-LIKE PROTEIN 1 451 - -
Vra3g1033 455 SUPERFAMILY Indolic compounds 2,3-dioxygenase-like 211 443 IPR037217 GO:0019441|GO:0020037|GO:0046872
Vra3g1033 455 PANTHER NEMATODE RESISTANCE PROTEIN-LIKE HSPRO1 1 451 IPR038759 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g1033 Vra-Chr3 10322721 10324480 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g1033 - - gmx:547603 787.719
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g1033 3 10322721 10324480 Vra6g0607 6 5503989 5505671 PCT