Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0604 ATGTTACCCCAGAAGCAAGGTGAAGAAACCATGATGTCAAGCCTGAATGAAACTGTTGAGCGTGAAGAGAGAGAGGATGAGAAGGTGGGTGGTTCACATTCCAGTTTGAGAAGCATTCTGTGGCATGGTGGATCTGTTTATGATGCATGGTTTAGCTGTGCTTCAAATCAGGTTGCGCAGGTCCTGCTAACACTGCCATACTCTTTCGCTCAGCTGGGAATGCTTTCTGGCGTCATATTCCAGGTCTTCTATGGAATAATGGGAAGTTGGACTGCTTATTTGATTAGCATTCTGTACATCGAGTACAGGAGCAGAAAAGAGAAAGAGAATGTCAGCTTCAAAAACCATGTCATTCAGTGGTTTGAAGTGCTGGAAGGTTTACTAGGTCCATACTGGAAAGCCATTGGCTTGGCCTTTAACTGCACTTTTCTCCTCTTCGGATCTGTCATACAGCTTATAGCTTGTGCAAGTAACATATACTACATAAATGACCACTTGGATAAGAGGACCTGGACTTACATATTCGGAGCATGCTGTGCCACAACGGTGTTCATACCTTCATTTCACAACTACAGGATTTGGTCTTTCCTTGGTCTTGGCATGACCACGTACACAGCCTGGTACTTAACCATTGCAGCCATTGTTCATGGCCAGGTTGAAAATGTTACTCACACGGGCCCCAAAAAATTGGTTTTGTATTTCACGGGAGCCACCAACATTCTCTACACTTTCGGCGGGCACGCCGTCACAGTGGAAATCATGCATGCAATGTGGAAACCTCAAAAGTTCAAATATATCTATCTTTATGCCACTCTTTTTGTATTCACACTCACCCTACCATCTGCCATTGCCGTTTACTGGGCCTTTGGTGACCAACTCCTGGACCACTCCAATGCCTTCTCTCTTCTCCCTCGCTCTGGTTGGCGTGACACAGGTGTCATCTTAATGCTGATTCACCAGTTTATCACTTTTGGATTTGCTTGTACACCATTGTATTTTGTGTGGGAGAAAGTGATAGGAATGCATGACACAAAGAGTATATGTTTGAGGGCTCTTGCAAGGTTGCCTGTGGTGATACCAATATGGTTTTTGGCCATTATTTTCCCTTTCTTTGGTCCTATAAACTCTGCTGTGGGGGCTCTTTTGGTTACCTTTACCGTCTATATCATCCCTGCTTCTGCTCACATGCTTACTTACAGGTCTGCTTCTGCACGACAGAATGCTGCTGAGAAATTGCCCTTCTTCATCCCAAGCTGGACGTTAATGTATGTGATCAATGCATTTGTGGTGGTGTGGGTTCTAGTGGTGGGATTTGGATTTGGAGGGTGGGCTAGCATGGCAAACTTCATCAAACAGGTTGACACATTTGGACTCTTTGCCAAATGCTACCAGTGCCCCCCGCATAAAACACCAGCTTCCAACCAAACACTGCATCACTGA 1440 0.4514 MLPQKQGEETMMSSLNETVEREEREDEKVGGSHSSLRSILWHGGSVYDAWFSCASNQVAQVLLTLPYSFAQLGMLSGVIFQVFYGIMGSWTAYLISILYIEYRSRKEKENVSFKNHVIQWFEVLEGLLGPYWKAIGLAFNCTFLLFGSVIQLIACASNIYYINDHLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLGMTTYTAWYLTIAAIVHGQVENVTHTGPKKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKYIYLYATLFVFTLTLPSAIAVYWAFGDQLLDHSNAFSLLPRSGWRDTGVILMLIHQFITFGFACTPLYFVWEKVIGMHDTKSICLRALARLPVVIPIWFLAIIFPFFGPINSAVGALLVTFTVYIIPASAHMLTYRSASARQNAAEKLPFFIPSWTLMYVINAFVVVWVLVVGFGFGGWASMANFIKQVDTFGLFAKCYQCPPHKTPASNQTLHH* 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0604 479 MobiDBLite consensus disorder prediction 15 30 - -
Vra6g0604 479 PANTHER AUXIN INFLUX TRANSPORTER 2 468 - -
Vra6g0604 479 MobiDBLite consensus disorder prediction 1 30 - -
Vra6g0604 479 Pfam Transmembrane amino acid transporter protein 42 435 IPR013057 -
Vra6g0604 479 Coils Coil 5 25 - -
Vra6g0604 479 PANTHER OS05G0424000 PROTEIN-RELATED 2 468 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0604 Vra-Chr6 5458780 5463902 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0604 22 465 Organic Solute Cotransporters AT2G21050 79.505 0.0 752
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0604 K13946 - gmx:100817572 911.753
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0604 6 5458780 5463902 Vra6g0604 6 5458780 5463902 ECH
Vra3g1035 3 10341733 10345597 Vra6g0604 6 5458780 5463902 PCT