Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g1035 ATGTCGCACCAGAAGCAAGGAGAAGAAGCCATGATGTCCAGTCTCACCCAAACTGGCCAGCATGAAGAGGGAGAGGAAGTCAAAGGGGAGACGTCACAATTTACCTTAAAAAATGCTTTCTGGCACGGTGGTTCTGCCTATGATGCTTGGTTCAGCTGTGCCTCAAATCAGGTTGCCCAGGTTCTGTTGACTCTGCCTTACTCTTTCGCACAGCTGGGGGTGGTTTCAGGCATTGTATTCCAAGTGTTCTATGGCTTGCTGGGGAGTTATACTGCTTATTTAATTAGTGTTCTGTACATTGAGTACAGAAGCCGGAAAGAGAAAGAGAATGTCAGCTTCAAAAACCATGTCATCCAGTGGTTTGAAGTGTTGGAAGGCTTACTGGGTCCATACTGGAAAGCCATAGGATTGGCCTTCAATTGCACTTTTCTCCTCTTTGGATCTGTTATCCAGCTCATAGCTTGTGCCAGTAATATATACTACATCAATGATCACTTGGACAAGAGGACTTGGACCTACATATTTGGGGCTTGTTGTGCCACCACAGTGTTCATTCCATCATTTCACAACTACAGGATATGGTCCTTCCTTGGTCTTGGCATGACCACATACACTGCTTGGTATTTGACCATCGCATCACTTGTTCATGGCCAGGTTGAAAATGTGACACATTCGGGCCCAAAAAAGTTGGTTTTGTATTTCACAGGCGCCACCAACATACTCTACACTTTCGGCGGGCACGCCGTCACAGTGGAAATCATGCATGCAATGTGGAAGCCTCGGAAGTTCAAATATATATATCTGTATGCAACATTTTATGTGTTCACCCTCACTATCCCCTCTGCTGTTTCCGTGTACTGGGCATTCGGTGACCAACTTTTGGATCACTCCAATGCCTTCTCACTTCTCCCGCGTACTGGCTGGCGTGACGCAGGTGTCATCCTAATGCTCATTCACCAGATTATCACATTTGGCTTTGCTTGTACGCCATTGTATTTTGTGTGGGAAAAAGTGATAGGGATGCATGACACAAAGAGCATATGCTTGAGGGCTCTAGCAAGGTTACCTGTGGTGATACCAATATGGTTTTTGGCTATTATTTTCCCTTTCTTTGGGCCCATTAATTCAGCTGTGGGGGCTCTTTTGGTGAGCTTCACCGTTTACATCATTCCCGCTTCGGCCCATATGCTCACCTTCAGATCTGCCGCAGCAAGACAGAATGCTGCGGAAAAACTGCCCTTCTTCATTCCGAACTGGACATTGATGTACGTGGTGAATGCATTGGTTGTGGTGTGGGTTCTGGTGGTGGGCTTTGGGTTTGGAGGATGGGCTAGCATGGTGAATTTCATCAAACAGGTTGACACATTCGGACTATTTGCCAAGTGCTACCAGTGTCCACCCAAACTCACCAACCATCACTCATAA 1425 0.4646 MSHQKQGEEAMMSSLTQTGQHEEGEEVKGETSQFTLKNAFWHGGSAYDAWFSCASNQVAQVLLTLPYSFAQLGVVSGIVFQVFYGLLGSYTAYLISVLYIEYRSRKEKENVSFKNHVIQWFEVLEGLLGPYWKAIGLAFNCTFLLFGSVIQLIACASNIYYINDHLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLGMTTYTAWYLTIASLVHGQVENVTHSGPKKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPRKFKYIYLYATFYVFTLTIPSAVSVYWAFGDQLLDHSNAFSLLPRTGWRDAGVILMLIHQIITFGFACTPLYFVWEKVIGMHDTKSICLRALARLPVVIPIWFLAIIFPFFGPINSAVGALLVSFTVYIIPASAHMLTFRSAAARQNAAEKLPFFIPNWTLMYVVNALVVVWVLVVGFGFGGWASMVNFIKQVDTFGLFAKCYQCPPKLTNHHS* 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g1035 474 PANTHER OS05G0424000 PROTEIN-RELATED 3 466 - -
Vra3g1035 474 MobiDBLite consensus disorder prediction 1 20 - -
Vra3g1035 474 MobiDBLite consensus disorder prediction 1 28 - -
Vra3g1035 474 PANTHER AUXIN TRANSPORTER-LIKE PROTEIN 4 3 466 - -
Vra3g1035 474 Pfam Transmembrane amino acid transporter protein 42 435 IPR013057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g1035 Vra-Chr3 10341733 10345597 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g1035 4 465 Organic Solute Cotransporters AT2G21050 75.541 0.0 744
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g1035 K13946 - gmx:100795466 891.338
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g1035 3 10341733 10345597 Vra6g0604 6 5458780 5463902 PCT