Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0593 ATGGGAAACAACATGGCAACCCACAACAAATACAAAAGTTTCATGTTCTTTATCAGAAAGTTCAAGGTCATCGAGCCAGATCCACCTCAGGACCTCGAGGAGGCGTTTTCAAAGTTCACAGGAGGAGGGCCCCACATGTCTGTGGAGCAGCTCCACCGTTTCATGGTGGAGCAACAGTGTGAAGAGCACTACACCTTATCGGACTCGGAAAAAGTTTTTGAGAGGATTTTGCAGGAGAGAAAGGCATGTCAAGAAACTGTTAAGATTGATCACAGCACAGAACATGAGATCACCCTTGATGAGCTCTTCCGATTTTTGCTTCATAATGATTTCAATGGTCCCTTGAAAACGCAGGTACATCATGATATGGGTGCTCCATTATCACATTATTTCATATATACAGGCCACAACTCCTATTTGAAAGGGAATCAACTCAGCAGTGACTGCAGTGAAGAGCCAATAATAGAGGCTTTGAAACGAGGAGTTCGTGTTATAGAACTTGATCTATGGCCAACTTGCAATAAGGATGATATTAAAGTAGATCATGGATGGACTTTTACCAACCCTGTCTCAGTGGTGAAATGTCTAGAGTGCATAAAGGAATATGCTTTTGTTGCATCTCCATACCCTGTGATCATAACCATAGAAGACCATCTCACAACAGATCTTCGAGCTAAATTTGCAGAAAATGACAGTGATCGTGATGAGGGAAGCATAAGTGCAAGCGAATATGACCACAAACCATTTTTGGAGTGTTCACCTGATTACAAACGCATAATTACTATCCATAACACGAAACTGAAGGGTTGCCTGAAGGATAAATTGAGAACAGAAGGTGAAGTTAGACGCCTAAGTTGGAGTGAGAATACTCTTGAAAAGGCTTCAGAATCTCATGGAGCAGATATTCTTAGGTTCACACAGAAAAATATCCTCAGGGTGTACCCGAGTGCAATGCGTGTCAAATCCACAAATTTCAAGCCACATATTGGGTGGATGTATGGGGCTCAGATGGTGGCATTCAATATGCAGGGCCATGGCAAATCGCTCTGGTTGATGCAGGGAATGTTCAGGGCAAATGGAGGATGCGGTTATGTAAAGAAGCCTCAAATTCTAATGCAGAAGCATCAATGTGACAATGAGTATGATCCTACAAGGATAGAGTCAATGAAGAAGACATTAAAGGTCAAAGTATACATGGGACATGGATGGAGCTCAGATTTCAGTCCTACACACTTTGATAAGTGCTCTCCGCCAGACTTCTTCACTAAGATCCGAATTATTGGAATGCCTGGTGATGTTGCAAAGAACAAAACAAAGGTCATCATGGACAACTGGTTTCCTGTTTGGAATGAAGAATTTGAATTCTGTTTAAGTGTTCCAGAGCTTGCAATGCTTATGATACAAGTAAAGGATAAAGATCAAGGAAAGGATGACTTTGCTGGGCAGACATGTTTACCAGTGTCAGAGTTAAAACATGGATTTCGCTCAGTGCCTTTATATGACAAAAAGGGAGAGAAATTTAAATCTGTCAAGCTGTTGATGCGATTTCAATTTGAATGA 1560 0.4147 MGNNMATHNKYKSFMFFIRKFKVIEPDPPQDLEEAFSKFTGGGPHMSVEQLHRFMVEQQCEEHYTLSDSEKVFERILQERKACQETVKIDHSTEHEITLDELFRFLLHNDFNGPLKTQVHHDMGAPLSHYFIYTGHNSYLKGNQLSSDCSEEPIIEALKRGVRVIELDLWPTCNKDDIKVDHGWTFTNPVSVVKCLECIKEYAFVASPYPVIITIEDHLTTDLRAKFAENDSDRDEGSISASEYDHKPFLECSPDYKRIITIHNTKLKGCLKDKLRTEGEVRRLSWSENTLEKASESHGADILRFTQKNILRVYPSAMRVKSTNFKPHIGWMYGAQMVAFNMQGHGKSLWLMQGMFRANGGCGYVKKPQILMQKHQCDNEYDPTRIESMKKTLKVKVYMGHGWSSDFSPTHFDKCSPPDFFTKIRIIGMPGDVAKNKTKVIMDNWFPVWNEEFEFCLSVPELAMLMIQVKDKDQGKDDFAGQTCLPVSELKHGFRSVPLYDKKGEKFKSVKLLMRFQFE* 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0593 519 Pfam Phosphatidylinositol-specific phospholipase C, X domain 123 229 IPR000909 -
Vra6g0593 519 PANTHER PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN 230 519 IPR001192 GO:0035556
Vra6g0593 519 PANTHER PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN 1 229 IPR001192 GO:0035556
Vra6g0593 519 Gene3D - 28 113 - -
Vra6g0593 519 ProSiteProfiles C2 domain profile. 371 501 IPR000008 -
Vra6g0593 519 SUPERFAMILY PLC-like phosphodiesterases 121 373 IPR017946 GO:0006629|GO:0008081
Vra6g0593 519 Pfam C2 domain 392 493 IPR000008 -
Vra6g0593 519 Gene3D C2 domain 387 519 IPR035892 -
Vra6g0593 519 SMART plcx_3 121 274 IPR000909 -
Vra6g0593 519 Gene3D Phosphatidylinositol (PI) phosphodiesterase 231 383 IPR017946 GO:0006629|GO:0008081
Vra6g0593 519 Gene3D Phosphatidylinositol (PI) phosphodiesterase 118 230 IPR017946 GO:0006629|GO:0008081
Vra6g0593 519 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 392 518 IPR035892 -
Vra6g0593 519 SUPERFAMILY EF-hand 11 123 IPR011992 -
Vra6g0593 519 PANTHER PHOSPHOINOSITIDE PHOSPHOLIPASE C 230 519 - -
Vra6g0593 519 PANTHER PHOSPHOINOSITIDE PHOSPHOLIPASE C 1 229 - -
Vra6g0593 519 SMART plcy_3 256 372 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Vra6g0593 519 SMART C2_3c 392 499 IPR000008 -
Vra6g0593 519 PRINTS Phospholipase C signature 126 144 IPR001192 GO:0035556
Vra6g0593 519 PRINTS Phospholipase C signature 152 172 IPR001192 GO:0035556
Vra6g0593 519 PRINTS Phospholipase C signature 310 331 IPR001192 GO:0035556
Vra6g0593 519 PRINTS Phospholipase C signature 331 349 IPR001192 GO:0035556
Vra6g0593 519 PRINTS Phospholipase C signature 485 495 IPR001192 GO:0035556
Vra6g0593 519 CDD C2_PLC_like 390 519 - -
Vra6g0593 519 Pfam Phosphatidylinositol-specific phospholipase C, Y domain 281 369 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Vra6g0593 519 ProSiteProfiles Phosphatidylinositol-specific phospholipase X-box domain profile. 121 229 - -
Vra6g0593 519 ProSiteProfiles Phosphatidylinositol-specific phospholipase Y-box domain profile. 285 371 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0593 Vra-Chr6 5342914 5346518 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0593 18 519 EF-hand Containing Proteins AT5G58670 41.815 6.40e-148 434
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0593 K05857 - gmx:100799027 613.224
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g1208 3 12848066 12852112 Vra6g0593 6 5342914 5346518 PCT