Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g1208 ATGAAAATTGAAGCATTCAAGATCAAGATGTTAAATTTCTTGACCAAAAGGGAGAAAGCTTGCAAGGCAGAACATCCTTTGGACCTTAAGGAAGCCTTTTCCAAGTTTGCGAGAGGAGGGAGCCAAATGAACAAGGATCAGCTTCTTCGGTTCATTGTGGAGCACCAGGGAGATAATATCTGCGGCGAAGAGGATTTGGATAAAATAATTGAGAGTTTTTTAGTAGCACGGAGTTGTAGTTCTAGCTCTAGAACCAGATCTGCAAGATTTCCTGATGTGTACAATAAACAAGGGTTAACTCTCAATGACTTCGTCGATTTTCTGCTTCTGCATGATTTCAATGCCGCCTTGAATGACAAGGTACATCATGATATGAATGCTCCCATGTCACATTATTTTATGTATACGGGACACAATTCCTATCTGACTGGGAATCAATTTACTAGTGAGAGCAGTGACGAGCCAATTATCGAGGCTTTGAAACAAGGTGTACGAGTAATAGAACTAGATTTATGGCCATCTAAATCTTCAACTAAAGATGGCATTAAAGTGGTTCATGGAAGGACTTTTACCACTCCAGTCGCCCTACGCACATGTCTAAAATCCATAAAGAAATATGCATTTTATAAATCAGATTATCCAGTAATTCTTACTTTGGAAGACCACCTAAAACCAAAACATCAGGATAAATTTGCAGAAATGGCATTTGAAATATTTGGAGAAATGCTTTATTGTCCCCAAACAGAGTCTTTAACAGAATTCCCCTCACCAGAATCGTTGAAAAAACGGATAATTATATCAACCAAACCCCCAAAGGAATTTCAGCAATCTGATAGTATCAGCAAAAGCAAAGCTGGGCCAGATGAATGTGAAACCCCTGACGAAAAATTTTGGGGACTGGAATTGTCAGATTCTGTGTCTAAACTAACTGAGGACAAGGGGAATGCACGTGATGCAGATCGGGAAAATATAAACACAAGCAATAACATTCCAAACAAACAAGGTGTATTGCCATACAAACACTTGATCACAATCCATGGCGGGAAAACAAAAGGTTCCATCAAGGATCAACTAAAAGATGATACTAAAGTTAAACGGCTGAGTTTGAGTGAGAAGAAACTAAAAAGTGCTTCTGAGTCTCATGGAGCCGACCTTATTAGGTTCACACAGAAAAATATCCTCAGGGTTTATCCTAAAGGAGAACGTGTCAAATCCTCAAATTTCAGGCCACATTTAGGGTGGATGTATGGAGCTCAGATGGTTGCATTCAATATGCAGGGGCATGGAAAATCACTCCGGTTGATGCAGGGAATGTTCAGAGCAAATGGAGGGTGTGGTTATGTTAAAAAGCCTGAATTTATAATCCGAACACTTCCACATGACGAGGTGTTTGATCCTAAAAAACAACTGCCAGTGAAACAGATCTTAAGAGTAAAAGTATACAAAGGAGATGGCTGGAATTTAGATTTCAGTCCAACACACTTTGATCGATTCTCTCCACCAGACTTTTACACAAAGGTGTGCATTGTTGGAGTGCCATCTGATTGTGTGAAGAAGAAAACAAGTGTAAATACGGACACATGGTATCCTGTTTGGGATGAAGAGTTTAAATTCGAATTGAGGGTTCCTGAGCTTGCTTTACTTTGGATAGAAGTGAAGGACAAAGATAAGGGAAAAGATGATTTTGCAGGACAAACTTGTTTGCCAGTATCAGAGCTCAGGCAGGGATTCCGGTCAGTCCCTCTGTTTGACCCCAAGGGAAAGAAATTGAATTCTGTGAAACTTCTAATGCGCTTCAAGATTGAAACTTTAAATAACTTGTCGATATCACTCATTTAA 1839 0.3953 MKIEAFKIKMLNFLTKREKACKAEHPLDLKEAFSKFARGGSQMNKDQLLRFIVEHQGDNICGEEDLDKIIESFLVARSCSSSSRTRSARFPDVYNKQGLTLNDFVDFLLLHDFNAALNDKVHHDMNAPMSHYFMYTGHNSYLTGNQFTSESSDEPIIEALKQGVRVIELDLWPSKSSTKDGIKVVHGRTFTTPVALRTCLKSIKKYAFYKSDYPVILTLEDHLKPKHQDKFAEMAFEIFGEMLYCPQTESLTEFPSPESLKKRIIISTKPPKEFQQSDSISKSKAGPDECETPDEKFWGLELSDSVSKLTEDKGNARDADRENINTSNNIPNKQGVLPYKHLITIHGGKTKGSIKDQLKDDTKVKRLSLSEKKLKSASESHGADLIRFTQKNILRVYPKGERVKSSNFRPHLGWMYGAQMVAFNMQGHGKSLRLMQGMFRANGGCGYVKKPEFIIRTLPHDEVFDPKKQLPVKQILRVKVYKGDGWNLDFSPTHFDRFSPPDFYTKVCIVGVPSDCVKKKTSVNTDTWYPVWDEEFKFELRVPELALLWIEVKDKDKGKDDFAGQTCLPVSELRQGFRSVPLFDPKGKKLNSVKLLMRFKIETLNNLSISLI* 613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g1208 612 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 475 600 IPR035892 -
Vra3g1208 612 MobiDBLite consensus disorder prediction 310 331 - -
Vra3g1208 612 SMART plcy_3 339 455 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Vra3g1208 612 MobiDBLite consensus disorder prediction 271 292 - -
Vra3g1208 612 PANTHER PHOSPHOINOSITIDE PHOSPHOLIPASE C 6 607 - -
Vra3g1208 612 PRINTS Phospholipase C signature 128 146 IPR001192 GO:0035556
Vra3g1208 612 PRINTS Phospholipase C signature 154 174 IPR001192 GO:0035556
Vra3g1208 612 PRINTS Phospholipase C signature 253 270 IPR001192 GO:0035556
Vra3g1208 612 PRINTS Phospholipase C signature 393 414 IPR001192 GO:0035556
Vra3g1208 612 PRINTS Phospholipase C signature 414 432 IPR001192 GO:0035556
Vra3g1208 612 PRINTS Phospholipase C signature 568 578 IPR001192 GO:0035556
Vra3g1208 612 Pfam Phosphatidylinositol-specific phospholipase C, X domain 125 269 IPR000909 -
Vra3g1208 612 SMART plcx_3 123 269 IPR000909 -
Vra3g1208 612 ProSiteProfiles Phosphatidylinositol-specific phospholipase X-box domain profile. 123 269 - -
Vra3g1208 612 SUPERFAMILY EF-hand 4 114 IPR011992 -
Vra3g1208 612 Pfam C2 domain 475 576 IPR000008 -
Vra3g1208 612 ProSiteProfiles Phosphatidylinositol-specific phospholipase Y-box domain profile. 368 454 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Vra3g1208 612 Gene3D Phosphatidylinositol (PI) phosphodiesterase 121 468 IPR017946 GO:0006629|GO:0008081
Vra3g1208 612 PANTHER PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN 6 607 IPR001192 GO:0035556
Vra3g1208 612 CDD C2_PLC_like 473 602 - -
Vra3g1208 612 Gene3D - 23 120 - -
Vra3g1208 612 Gene3D C2 domain 469 610 IPR035892 -
Vra3g1208 612 SMART C2_3c 475 582 IPR000008 -
Vra3g1208 612 Pfam Phosphatidylinositol-specific phospholipase C, Y domain 360 453 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Vra3g1208 612 SUPERFAMILY PLC-like phosphodiesterases 123 455 IPR017946 GO:0006629|GO:0008081
Vra3g1208 612 ProSiteProfiles C2 domain profile. 455 584 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g1208 Vra-Chr3 12848066 12852112 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g1208 5 602 Acyl Lipid Metabolism Gene Families AT2G40116 52.258 0.0 607
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g1208 K05857 - gmx:100803435 937.176
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g1208 3 12848066 12852112 Vra6g0593 6 5342914 5346518 PCT