Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0592 ATGACCAGCGTCACCTACGGCTACAAAATGTTCAAGTACTTCAACAAAACCTACGCCGTCTCCGAGCAGGCCCCTCCGCCGGACGTCAAGGACGCATTCTCCCTCTTTGCCGAAGGCGCCGACGTCATGTCCGCCGACCAGCTCCTCCGCTTTCTGCACGAACACCAACTCGAATTGGACTACACCGCAGAAGATTCCAACCGCGTCGTCGAAACCGTCCTGCAATCGCGCACACAAAACGCCGAATGCGACTCCGACAACAGCGGTCTAACGCTCGACGAGTTCTTCCGCTTCTTGTTCCTCGTCGATTTCAACGATCCCCTCAAATCCAAGGTACATCAAGATATGAATGCTCCGTTGTCACATTATTTCATATATACAGGGCACAATTCCTATCTGACTGGGAATCAGCTGAGCAGCGATTGCAGTGATGTGCCAATAATAAAGGCTTTGCAACGAGGTGTGCGAGTAATTGAACTAGATTTATGGCCAAATTCAACTAAAGATGATATAGACGTCGTTCATGGAAGGACACTTACTGCTCCTGTCACACTTATCCAGTGTTTGAAGTCCATAAAAGAGTATGCTTTTGTTAAATCTGAGTACCCACTAATTCTAACTTTAGAAGACCACCTTACACCAATTCTTCAAGCTAAAGTTGCAGAGATGTTAGCTCAAGTATTTGGAGATATGTTATACTACCCAGAGACGGATCTTCTCACAGAATTTCCCACACCAGAGTCGGTGAAAGGTCGAATTCTTATATCAACCAAACCACCATCAAAAGAATATCTTCAATCCAAGCAATTCAAGGATAGTGACAGTGAGAGGGAATCGACTGAAGAATTATCGCCATGCGTTATCAGTGAATTGGAAGCTGCTGCTGCTGATGAAAAGTCCGATGGAAATGATGTTGATGAGGAAAGCTTGAATGCCCGTGATAAAAAACCAGACCAACAGAGAGCACCAGAGTACAATCGTTTAATTACAATCCATGCTGGGAAGCCAAAGGGTCCTGTAAAGGACCACTTAAATGTTGTTGGGGGTGTAAGGCGCTTGAGCTTGAGCGAGCAGGAACTTGAAAAGGCTTCTACCACTTATGGATCTGATATTGTTAGGTTTACACAGAAGAATATTATCAGGGTGTATCCAAAGGGAACACGTGTTAACTCTTCAAATTACAGGCCACATATAGGATGGATTTACGGAGCTCAGATGGTGGCATTTAACATGCAGGGGCATGGAAAATCACTCTGGTATATGCAAGGGATGTTTAGAGCGAATGGCGGTTGTGGTTATGTGAAAAAGCCTTCATTTCTGATAGAAGAAGGCCCAGATGATGAGGTTTTTGATCCTAAAAAACCAATGCCAGTGCAAAAGACATTGATGGTAAAAGTGTACATGGGAAACGGGTGGAGCACAGATTTCAGTAAAACACACTTCGATGCATTCTCTCCGCCGGACTTTTACACAAAGGTTTGCATTGTTGGAGTACCTGCTGATAAAGTGAATAAGAAGACGAAGATAATTAATGATGATTGGTTTCCCGTTTGGGATGAAGAGTTTGAATTTCCTTTGTGTGTTCCAGAACTAGCTTTACTTTGGATAGAGGTTCGAGAGTACGATATGCATGAAAAGGATGACTTTGGCGGCCAATCATGTTTACCAATCTCTGAGCTAAGATCTGGTTTCCGGGTAATCCCTCTATTTGATGAGAAGGGCGAGCAATTAAAATCTGTAAAGCTTTTAATGCGGTTTCAGTTCAAATGA 1770 0.439 MTSVTYGYKMFKYFNKTYAVSEQAPPPDVKDAFSLFAEGADVMSADQLLRFLHEHQLELDYTAEDSNRVVETVLQSRTQNAECDSDNSGLTLDEFFRFLFLVDFNDPLKSKVHQDMNAPLSHYFIYTGHNSYLTGNQLSSDCSDVPIIKALQRGVRVIELDLWPNSTKDDIDVVHGRTLTAPVTLIQCLKSIKEYAFVKSEYPLILTLEDHLTPILQAKVAEMLAQVFGDMLYYPETDLLTEFPTPESVKGRILISTKPPSKEYLQSKQFKDSDSERESTEELSPCVISELEAAAADEKSDGNDVDEESLNARDKKPDQQRAPEYNRLITIHAGKPKGPVKDHLNVVGGVRRLSLSEQELEKASTTYGSDIVRFTQKNIIRVYPKGTRVNSSNYRPHIGWIYGAQMVAFNMQGHGKSLWYMQGMFRANGGCGYVKKPSFLIEEGPDDEVFDPKKPMPVQKTLMVKVYMGNGWSTDFSKTHFDAFSPPDFYTKVCIVGVPADKVNKKTKIINDDWFPVWDEEFEFPLCVPELALLWIEVREYDMHEKDDFGGQSCLPISELRSGFRVIPLFDEKGEQLKSVKLLMRFQFK* 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0592 589 MobiDBLite consensus disorder prediction 264 321 - -
Vra6g0592 589 Pfam C2 domain 461 563 IPR000008 -
Vra6g0592 589 Gene3D C2 domain 455 589 IPR035892 -
Vra6g0592 589 SMART C2_3c 461 569 IPR000008 -
Vra6g0592 589 PANTHER PHOSPHOINOSITIDE PHOSPHOLIPASE C 6 6 588 - -
Vra6g0592 589 PRINTS Phospholipase C signature 119 137 IPR001192 GO:0035556
Vra6g0592 589 PRINTS Phospholipase C signature 145 165 IPR001192 GO:0035556
Vra6g0592 589 PRINTS Phospholipase C signature 242 259 IPR001192 GO:0035556
Vra6g0592 589 PRINTS Phospholipase C signature 379 400 IPR001192 GO:0035556
Vra6g0592 589 PRINTS Phospholipase C signature 400 418 IPR001192 GO:0035556
Vra6g0592 589 PRINTS Phospholipase C signature 555 565 IPR001192 GO:0035556
Vra6g0592 589 ProSiteProfiles Phosphatidylinositol-specific phospholipase Y-box domain profile. 354 440 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Vra6g0592 589 ProSiteProfiles Phosphatidylinositol-specific phospholipase X-box domain profile. 114 258 - -
Vra6g0592 589 Gene3D - 23 107 - -
Vra6g0592 589 MobiDBLite consensus disorder prediction 294 321 - -
Vra6g0592 589 Pfam Phosphatidylinositol-specific phospholipase C, Y domain 353 439 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Vra6g0592 589 SUPERFAMILY PLC-like phosphodiesterases 114 442 IPR017946 GO:0006629|GO:0008081
Vra6g0592 589 SUPERFAMILY EF-hand 16 116 IPR011992 -
Vra6g0592 589 Gene3D Phosphatidylinositol (PI) phosphodiesterase 111 453 IPR017946 GO:0006629|GO:0008081
Vra6g0592 589 MobiDBLite consensus disorder prediction 265 283 - -
Vra6g0592 589 CDD C2_PLC_like 460 589 - -
Vra6g0592 589 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 461 588 IPR035892 -
Vra6g0592 589 PANTHER PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN 6 588 IPR001192 GO:0035556
Vra6g0592 589 Pfam Phosphatidylinositol-specific phospholipase C, X domain 116 258 IPR000909 -
Vra6g0592 589 SMART plcx_3 114 258 IPR000909 -
Vra6g0592 589 SMART plcy_3 325 441 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Vra6g0592 589 ProSiteProfiles C2 domain profile. 442 571 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0592 Vra-Chr6 5336791 5342079 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0592 3 589 Acyl Lipid Metabolism Gene Families AT2G40116 60.359 0.0 738
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0592 K05857 - gmx:100777010 990.719
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0592 6 5336791 5342079 Vra6g0592 6 5336791 5342079 ECH
Vra3g1207 3 12838157 12846388 Vra6g0592 6 5336791 5342079 PCT