Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g1207 ATGGCCACTCACAACTACAAAGTCTTCAGCTGCTTCAACAGAAAGTTCACCGTCACCGAACCGGAACCACCGCCCGACGTCCAAAAAGCCTTTTCTGAATTCTCCGAAGGCGCCTCCTCCATGTCCGCCGACCAACTGCTCCGGTTCCTTGCGGAGCATCAGGGCGAAGTGGACTGCACCGTTTCCGATTCCGAGCAGATCCTCCAGCAATCGAGGAAAGAGGACGGGGAAACTGGATTCGATCTCCACTACTTCTTCCATTTCCTGCAAGACAGCGATTTGAACGTCCCCTTGAAATCTCAGGTCCATCATGATATGAATGCTCCAATTTCACATTATTTCATATACACTGGGCACAATTCCTATCTGACAGGGAATCAACTGAGCAGTGACTGCAGTGATGTGCCAATCATAAAGGCTTTGCAACGAGGTGTGCGAGTAATTGAACTGGATTTATGGCCAAATTCAGATAAAGATGATATCGATGTAGTTCATGGAAGGACTCTTACCACTCCTGTCTCACTCCTCCAATGTTTGAAGTCCATAAAAGAGTATGCCTTTGTTAAATCTCAGTACCCACTCGTTATAACTTTAGAAGATCACCTTACTCCAGATCTTCAAGCCAAAGTTGCAAAGATGGCCACCCAAGTATTTGGAGAATTGCTTTATTATCCTCAGACAGATTCCCTGATGGAATTCCCCTCACCAGAATCATTGAAAGGTCGAATTCTTATATCAACAAAACCACCAAAAGAATTTCTTGAATCCAGTGAAAAGGAATCAGCTGACGAGGTTTCCTCATTGCGAGAAAATGCTAATGAACAAAGAACGGATAATGAGAGTGCACCAGAGTACAAACGCTTGATTACAATCCATGCTGGGAAACCGAAGGGTGAAATACAGGATGAATTAAAAGCTGCTGGTAAAGTTAGGCGCTTAAGCTTGAGTGAGCAAGCACTTGAAAAGGCTTCTGAATCTTATGGAGCTGATATAGTCAGATTTACGCACAACAATATTCTCAGAGTGTATCCAAAAGGAACACGTCTCACCTCCTCAAATTACAAACCACACATAGGGTGGACGTACGGAGCTCAGATGGTTGCGTTTAACATGCAGGGGCATGGTAAATCACTTTGGTACATGCAAGGAATGTTTAGATCAAATGGTGGGTGCGGTTATGTGAAAAAGCCTGACTTTCTAATTCAAAAAGGTCCGCATGATGAGGTTTTTGATCCTAAAATAGCATTGCCAGTGAAAAAAACATTAAAGGTAAAAGTCTACCTGGGAAAAGGTTGGAGCTTAGATTTCAGCCCATCAGACTTTGATAGTTACTCACCACCAGACTTTTATGTAAAGGTTTGTATCGTTGGAGTTCCGGCTGATATGATCAAGAAGAAAACAAGTGTAATTTCAAATAATTGGTTTCCTGTATGGAACGAAGAGTTTGATTTCCCTTTGACTGTTCCAGAGCTGGCCTTGCTCCGCATAGAAGTTCGAGAAGAAGATAAGCATCAAAAGGATGACTTCGGTGGACAGACGTGTTTGCCAGTCTCAGAACTAAAATCTGGATTCCGATCTGTCCCTCTGTATGATGAAAAGGGTGACAAATATAAATCTGTGAAGCTTTTAATGCGATTTCAGTTTAGATGA 1650 0.4291 MATHNYKVFSCFNRKFTVTEPEPPPDVQKAFSEFSEGASSMSADQLLRFLAEHQGEVDCTVSDSEQILQQSRKEDGETGFDLHYFFHFLQDSDLNVPLKSQVHHDMNAPISHYFIYTGHNSYLTGNQLSSDCSDVPIIKALQRGVRVIELDLWPNSDKDDIDVVHGRTLTTPVSLLQCLKSIKEYAFVKSQYPLVITLEDHLTPDLQAKVAKMATQVFGELLYYPQTDSLMEFPSPESLKGRILISTKPPKEFLESSEKESADEVSSLRENANEQRTDNESAPEYKRLITIHAGKPKGEIQDELKAAGKVRRLSLSEQALEKASESYGADIVRFTHNNILRVYPKGTRLTSSNYKPHIGWTYGAQMVAFNMQGHGKSLWYMQGMFRSNGGCGYVKKPDFLIQKGPHDEVFDPKIALPVKKTLKVKVYLGKGWSLDFSPSDFDSYSPPDFYVKVCIVGVPADMIKKKTSVISNNWFPVWNEEFDFPLTVPELALLRIEVREEDKHQKDDFGGQTCLPVSELKSGFRSVPLYDEKGDKYKSVKLLMRFQFR* 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g1207 549 SMART C2_3c 421 529 IPR000008 -
Vra3g1207 549 Pfam Phosphatidylinositol-specific phospholipase C, X domain 106 248 IPR000909 -
Vra3g1207 549 MobiDBLite consensus disorder prediction 252 282 - -
Vra3g1207 549 PANTHER PHOSPHOINOSITIDE PHOSPHOLIPASE C 6 2 548 - -
Vra3g1207 549 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 421 548 IPR035892 -
Vra3g1207 549 SMART plcx_3 104 248 IPR000909 -
Vra3g1207 549 ProSiteProfiles Phosphatidylinositol-specific phospholipase Y-box domain profile. 314 400 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Vra3g1207 549 SUPERFAMILY EF-hand 5 106 IPR011992 -
Vra3g1207 549 Pfam C2 domain 422 523 IPR000008 -
Vra3g1207 549 Pfam Phosphoinositide-specific phospholipase C, efhand-like 26 70 IPR015359 -
Vra3g1207 549 Pfam Phosphatidylinositol-specific phospholipase C, Y domain 312 399 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Vra3g1207 549 ProSiteProfiles Phosphatidylinositol-specific phospholipase X-box domain profile. 104 248 - -
Vra3g1207 549 CDD PI-PLCc_plant 103 388 - -
Vra3g1207 549 CDD C2_PLC_like 419 549 - -
Vra3g1207 549 Gene3D Phosphatidylinositol (PI) phosphodiesterase 101 413 IPR017946 GO:0006629|GO:0008081
Vra3g1207 549 Gene3D C2 domain 414 549 IPR035892 -
Vra3g1207 549 PRINTS Phospholipase C signature 109 127 IPR001192 GO:0035556
Vra3g1207 549 PRINTS Phospholipase C signature 135 155 IPR001192 GO:0035556
Vra3g1207 549 PRINTS Phospholipase C signature 232 249 IPR001192 GO:0035556
Vra3g1207 549 PRINTS Phospholipase C signature 339 360 IPR001192 GO:0035556
Vra3g1207 549 PRINTS Phospholipase C signature 360 378 IPR001192 GO:0035556
Vra3g1207 549 PRINTS Phospholipase C signature 515 525 IPR001192 GO:0035556
Vra3g1207 549 SMART plcy_3 285 401 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Vra3g1207 549 MobiDBLite consensus disorder prediction 251 282 - -
Vra3g1207 549 Gene3D - 22 100 - -
Vra3g1207 549 ProSiteProfiles C2 domain profile. 402 531 IPR000008 -
Vra3g1207 549 PANTHER PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN 2 548 IPR001192 GO:0035556
Vra3g1207 549 SUPERFAMILY PLC-like phosphodiesterases 104 402 IPR017946 GO:0006629|GO:0008081
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g1207 Vra-Chr3 12838157 12846388 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g1207 2 548 Acyl Lipid Metabolism Gene Families AT2G40116 60.167 0.0 722
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g1207 K05857 - gmx:100786997 976.467
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g1207 3 12838157 12846388 Vra6g0592 6 5336791 5342079 PCT