Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0586 ATGCCTACGCCGGTGGCTATTGCGATACAATGCCTGACGGTGGAGGCCGCAAAGGCGCTCCACGACGCCGTATCGGTGGCTCGGCGGCGCGGTCACGCCCAGACTACTTCACTGCACGCCGTCTCTGCTATGCTTTCCCAGCCATCCTCTACCCTACGCGACGCATGCACACGCGCCCGAAGCGCCGTCTACTGGACGCGCCTCCAATACAGAGCCCTCGAACTCTCCCTCAGCGTGTCACTCGACCGTGTGCCGTCAGATTCTTGCGTCGGCGATGATCCTCCTGTGTCGAACTCGCTCATGGCCGCCATCAAGCGGTCGCAAGCTGAGCAGCGTCGCAAGCCGGAGAACTTCCACCTCCAGCAGCCTTGTTGCGTTAAGGTGGATCTTCGGCACCTGATCCTGTCCATCCTCGACGACCCCGTCGTGAGTCGCGTCTTCGCTGAAGCGGGTTTTCGGAGCTCTGAGATCAAACTCGCTATCCATCGTCCTCTTACTAGCCTCATGCACCAACAACTTCCCCTTCGCCGGAGCTTCCCCTTCCCTTTCTCCGGCGAGGACAACGATGATCATCGGAGGATCGTGGAGGTGCTATCCCGGAAGAGAGGCAGAAATCCCTTGCTTCTGGGTGCATGTGCACGGGATGCGCTGTGGAGCTTCGCGGATGCAGTGGAGAGGCAAAACGGCGGCGTTTTACGGGAGTTGTGCAGTTTGCGCGTGAAGCGCATTGGAAGAGAGGTTATGGAGTTTGTTAGTGGGAGCTGCGGGGAAGAGGGTGTGCGTTGGAGGTTTGAAGAGATTGGTGATATGGTGGAGCAGCGCGTGGGGAAGGGTATAGTGGTGGATGTGGGAGATTTGGAGGATTTGGTGAATGAGAAAAATGGTTGGGGTGAGAGTGAGGCAGTTAGGTATGTGGTTGTAGGGCTAGGAAAGTTGTTGGAAGTTAGTTATGGAAGATTATGGCTCATTGCTGCTGCCACAAATTATGAAAGCTTTATCAAATTCGTTGGAAGGTTTCCTTCTATAGAGAAAGATTGGGACTTGCAGCTTTTGCCAATTTTCTCTCTTCGCTCTTCGTTTTCTGCTCAATCATATCACACTCGCAGGTGTGAACCCAGTACTCTCGCTGCTTCAACTGTTGATCTTTGCTTGCCTAACTTACCTCCACGATTGCACATTTCAGAATTAGGATCAGCAAAAGGATTAAATCTTAAGATAGAAGATGATGGTGTCGTGTGGAATAGTAGTGAATCTGCTACGCATAAGAACTTGAACAAGAGGTCGCAGAATCTGCATAAAATATTCCCTGATGCTAATAACAGTCCAACAGTTATGGCGTTCCAATATTGTGACAATAAAGAAAAAGATGCTAACAACACCAGCAACAGACTTACACTCACATCATCAAGGCATGAGAAGTATACTCCAAAATTTTCACCGAAGTTCCAGAAAGTGGAATGTTTGGATTCAAGTGATCTAGGATCATGCAACATGTACACTTCCATTGTTTGTGATTTGGGATTAGGAATGTGCTCCTCTCCTTCCAGTAATAAATCTAGCAAACCTTCCAGTCAATTTACAATTGAACCTCCAAAGGAAATGTCAAGTTTATGTTCTTCAGAAGTTAATGTTGCTGGTGGAAATATCTTGAAGCCTCCATCCCAGTCACCAACCTTAAGTTTTGACTTTTGTAGACAGGTTGATCCAAGGAATCCAAAAATTCTTTACGATGTCCTTACTAAGGAGGTTAGCTGGCAAGATGAAGCCATTAGTGTCATCAGCAAAACAATAGCTGGCAGCCATACAAAAAAGGTTGGTGCAAATCATAGGGGTGACGTGTGGATGAATTTTGTTGGACCAGATAGGAATGGTAAAAAGAAAATTGCTGTTACTCTAGCTGAGTTCTTGTATGGAAGCCGGGATAGATATATTTTTGTGGATCTAGGTTCTAAAGAAATGAAAGGATGCAATGTGAAATTCAGAGGAAAGACTACTCTTGATTTAATTGTAGGTGAATATTTCAAGAACCCCTTCTCTGTGGTCTTTCTCGAAAATGCAGACGAGGCTGATGTGTTAGTTCAAAATGGTTTGTCTCAAGCCATGAAAACAGGAAAGCTTACTGACTCACGTGGAAGAGAAGTGGGTGTAAACAATGCAATATTTGTGACTTCTTTCACTGGTCACCAAGCAATGGAACCGTCCAACTCTTCCGAGAGAATAGCAAAGGTAAAAGGGAGGGCTATAAAAATAACAGTTGAACATGTGAGTGGAGAGATCAAAAGCCAAAGTGTTAGTGTTTGTGATGGTTCAATAGATAACATTCCCAATCCAGTTTTAGCAAATAAACGAAATTTCATTAGCCACAATGAGTTTCAAGATCAGCACTTAATCTCAAACAAGGCTAAAAGAGTACACACAACACCAAATTTGCATTTAGATTTGAATCTTCCAGCTGAAGAGAATGAACCTCAAGTTCAACAAAGGAATGATGTGAACTTGGAATATGCATCAACTGAGATCCAAAACCATTGGTTGCAAGATTTGTATAAACTGGTTGATGAAACGGTTGTTTTCAAACCTTTTAATTTTGATGCACTTGCAGATAGAGTGGTGAATGTGATGACATGTAGCCTTACAGATAGAATCTGA 2649 0.4549 MPTPVAIAIQCLTVEAAKALHDAVSVARRRGHAQTTSLHAVSAMLSQPSSTLRDACTRARSAVYWTRLQYRALELSLSVSLDRVPSDSCVGDDPPVSNSLMAAIKRSQAEQRRKPENFHLQQPCCVKVDLRHLILSILDDPVVSRVFAEAGFRSSEIKLAIHRPLTSLMHQQLPLRRSFPFPFSGEDNDDHRRIVEVLSRKRGRNPLLLGACARDALWSFADAVERQNGGVLRELCSLRVKRIGREVMEFVSGSCGEEGVRWRFEEIGDMVEQRVGKGIVVDVGDLEDLVNEKNGWGESEAVRYVVVGLGKLLEVSYGRLWLIAAATNYESFIKFVGRFPSIEKDWDLQLLPIFSLRSSFSAQSYHTRRCEPSTLAASTVDLCLPNLPPRLHISELGSAKGLNLKIEDDGVVWNSSESATHKNLNKRSQNLHKIFPDANNSPTVMAFQYCDNKEKDANNTSNRLTLTSSRHEKYTPKFSPKFQKVECLDSSDLGSCNMYTSIVCDLGLGMCSSPSSNKSSKPSSQFTIEPPKEMSSLCSSEVNVAGGNILKPPSQSPTLSFDFCRQVDPRNPKILYDVLTKEVSWQDEAISVISKTIAGSHTKKVGANHRGDVWMNFVGPDRNGKKKIAVTLAEFLYGSRDRYIFVDLGSKEMKGCNVKFRGKTTLDLIVGEYFKNPFSVVFLENADEADVLVQNGLSQAMKTGKLTDSRGREVGVNNAIFVTSFTGHQAMEPSNSSERIAKVKGRAIKITVEHVSGEIKSQSVSVCDGSIDNIPNPVLANKRNFISHNEFQDQHLISNKAKRVHTTPNLHLDLNLPAEENEPQVQQRNDVNLEYASTEIQNHWLQDLYKLVDETVVFKPFNFDALADRVVNVMTCSLTDRI* 883
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0586 882 Gene3D - 554 860 IPR027417 -
Vra6g0586 882 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 574 727 IPR027417 -
Vra6g0586 882 SUPERFAMILY Double Clp-N motif 12 161 IPR036628 -
Vra6g0586 882 Gene3D - 9 164 IPR036628 -
Vra6g0586 882 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 374 874 - -
Vra6g0586 882 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 1 359 - -
Vra6g0586 882 PANTHER PROTEIN SMAX1-LIKE 8 374 874 - -
Vra6g0586 882 PANTHER PROTEIN SMAX1-LIKE 8 1 359 - -
Vra6g0586 882 Pfam Clp amino terminal domain, pathogenicity island component 23 54 IPR004176 -
Vra6g0586 882 Pfam Clp amino terminal domain, pathogenicity island component 132 161 IPR004176 -
Vra6g0586 882 ProSiteProfiles Clp repeat (R) domain profile. 9 167 IPR004176 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0586 Vra-Chr6 5257044 5263846 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0586 - - vra:106764383 1755.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g1202 3 12779646 12785097 Vra6g0586 6 5257044 5263846 PCT