Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g1202 ATGCCCACGCCCGTCGCAGCGGCGCGTCAATGCCTAACCGCCGACGCCGCCCGCGCCCTCGACGAGGCCGTCTCCGTCGCACGCCGACGGGGCCACGCCCAGACCACCTCTCTACACGCTGTCTCCGCCCTCCTCTCCCTACCATCCTCCTCCCTCCTCCGCGACGCCTGCTCACGCGCCCGAAACTGCGCGTACTCCCCACGCCTCCAGTTCAAGGCCCTCGACCTCTGCCTCTCCGTCTCACTCGACCGCGCGCCATCGTCGCACAGCCACCTCTCTTCCGACCATGATCCTCCCGTCTCCAACTCCCTCATGGCCGCCATCAAACGCTCACAGGCCAACCAGCGGCGCCACCCTGATAACTTCCACTTCTATCACCACCAACAAACTCACCATAACCTAAACTTAAACCAAAACCAAAACCACCAACAACCCTTTTCTGTTTCTTCTGTCAAAGTAGAGCTTCAGCATTTGATTCTGTCAATCCTGGACGACCCCGTCGTAAGCCGGGTCTTCGCCGAAGCTGGTTTCCGGAGCTCCGACATCAAACTCGCCATCCTCCGCCCTCTGCGCCCTCGAGGGCCGCCGATTTTCCTCTGCAATTTATCCGAGCCGCCGCGGCGGTTTCCTTTCTTCTTCGGCGGGGAAGACGGTGGCGGCGAAAATTACCGGCGAATCGGGGAGGTTCTGGTGCGGAGTCGGGGGCGGAATCCGCTGCTTCTTGGAGCGTGCGCCGGCGACGCTCTCCGGAGCTTTGTGGAGGCTGTGGAGAAACGGAGGGAGGGTGTTCTGCCGGTGGAGCTATCGGGGCTGAAGGTGGTTTGCATTGCGGATGAGGTGGCTCGTGGGGATGCGGAGGGTGTGGGGAAGCGCGTGAGGGAGATTGGGAGCTTGGCAGAGCAGTGTGTGGGACCTGGTGTTGTTGTGAGTTTCGGGGACTTGAAGGGTTTTGTGAGCGACGAAGAAGGTGGTGGTGAGGGTTTGAGGGGTGTGGTTGGGGAATTGGCGAAGCTGTTGCAGGTTCATTATGATAAGTTTTGGTTAATGGGTGCTGCTGCTAGTTACGAGAGTTACTTGAAATTCGTGGGGAAGTTTCCTTGCATAGAGAAAGAGTGGGATTTGCAGCTTCTGCCTATCACCTCTGTCAAGCCTTCTGAATCCTATCACCGCCCCAGGTCCAGCTTAATGGATTCATTTGTGCCATTTGGTGGCTTTTTTTCGTCACAGTCTGATTTAAAAGGTCCACCTAATGGATCGTTTTATTGTGTTCCGCACTGTCATCAGTGTGGTGAAAGGTGTGAACATGATGTTCTTGGTGCTTCCAAGGAAAGGCTTTCTGCTTCTTCAGCTGCTGATTCCCATCATTCTAGCTTGCCTCCGTGGTTACAGATTGCAGAATTTGGCACATCAAAGGGATTGAATGTTAAGACCAAAGATAATGACGTTTTGCTTGATAGTAGTGAACCTGGGCCACTGCGTAAGAACTTAGACAAGTTATCCCAGCATCTCCACCAGCAAGATGCAAATGTTGTGGGGTTTCAGTGTGGTGCTGACAAGAAAAAGGAAGATGCTGACAATTGCAGCAGCAAAATGACAGACAAATCACCCAGTGACTACATCAATCTCAACTCCCATGTACCTGTTGGCATGCAAATGATGCCCGCGTCACACTCAAGTAGTCCTTTTCCTGAAGTTTTCAAGGCAAAGCAGGAGAAATATACTTCAAAACTTGCTGAGATATTTCAGAAAGTGGAAGATCACGAGTCAGGTGACCTAAGATCGTGCAACATGTCCAATTCAAGCGTGTGTGATGGAAGTCAAATGTCTCCCACATCTGTAACTTCTGTAACCACAGACCTCGGGTTAGGAATATGCTCTTCTCCTACCAGCAATAAGCTAAAGAAACCTACTGTTCAATACACAATGGAGCCTCCAAAGGAAATCCCAAGTCTGTTTTCTTCAAACTTAAATTTGGCTGATGGGAATATCTTGAAGCATCCATCGCAGTCTTCCTCCTGCTTAAGTTTTGACTATTGTGGACAAGTCGATGCAAAAAATCCCAAATTTCTTTTTGAAGCTCTTTCCAAGGAGGTAAGCTGGCAAGACGAGGCTTTACAGGCTATCATCAAAACAATAGTTTCCAGCTCAACAAAAAGGGTCAAACACCGTGGAGTAAATCAGCCTGGAGACATCTGGATGAATTTTGTCGGACCTGACAGACTTGGTAAAAAGAAAATTGCCGTCTCTCTAGCCGAGTTTTTGTATGGCAGCCGGGAAAGCTTTATTTTTGTGGATCTAAGTTCTGAAGAAATGAAAGGATGCAATGCGAAATTCAGAGGGAAAACTACCCTTGATTTTATTGTAGGGGAGTGTTGCAAAAAACCCTTGTCCGTGGTTTTGCTTGAAAATGTAGACAAGGCAGATATTCTAGCTCAAAAAAGTTTGTCTCAAGCCATCAAGACAGGAAAAATAACAGACTCTCGTGGAAGAGAAGTTAGTGTAAACAATACTGTGTTTGTTTTATCTTTCTCAGATTACCAAAATAGTTGCATTTCAACTGGTGAACCTTCCAACTATTCTGAGGAAAGAATACTGAAGGCAAAGGGGGGAGGTATCAAGCTACGCGTCAAACATGTGATTGGAGACCACAGAAGCCAAAGCATCGGTGTCACTAACAAATCAATGGATGCCATTCCTAATCTAAATTTCCTAAGCAAACGTAAGTTGATTGGTGACAAGGAATTTCATGATCAAGATATACTCTCTGATACAGCTAAAAGGGCACATACAGCATCAGGCTGGCAGTTAGATTTGAATCTCCCAGCCGAAGAAAATGAACAGAAACTAACCAATGAAGGAAACCCCGAACATGTCACAACCGAAAACAAAAGCCTTTGGTTGCAAAATTTGTGTGACCTGGTTGATGAAACAGTTGTTTTTAAACCTTATGATTTTGATGCACTTGTGGATAGATTGTTGAACGTGATCAGAGGTAACTTCAAAAAGGTTCTTGGATCTGAATGTGTATTACAGATTCAGACAGAAGTGATGGAGCAATTGCTTAAAGCTCAATATGTCTCGGACAGGGATTCGGAGGTGGAGAACTGGGTGGAGAAAGTTCTATGTGGAGGATTTACAGAAATACAGAGAAGGTACAACCTCACTACTGGTTCTATTGTAAAACTTGCTACGTATCCAGAACAAGCTCCTGGTGTACACCTTCCCCCAAGGATAATTTTAGATTGA 3246 0.4794 MPTPVAAARQCLTADAARALDEAVSVARRRGHAQTTSLHAVSALLSLPSSSLLRDACSRARNCAYSPRLQFKALDLCLSVSLDRAPSSHSHLSSDHDPPVSNSLMAAIKRSQANQRRHPDNFHFYHHQQTHHNLNLNQNQNHQQPFSVSSVKVELQHLILSILDDPVVSRVFAEAGFRSSDIKLAILRPLRPRGPPIFLCNLSEPPRRFPFFFGGEDGGGENYRRIGEVLVRSRGRNPLLLGACAGDALRSFVEAVEKRREGVLPVELSGLKVVCIADEVARGDAEGVGKRVREIGSLAEQCVGPGVVVSFGDLKGFVSDEEGGGEGLRGVVGELAKLLQVHYDKFWLMGAAASYESYLKFVGKFPCIEKEWDLQLLPITSVKPSESYHRPRSSLMDSFVPFGGFFSSQSDLKGPPNGSFYCVPHCHQCGERCEHDVLGASKERLSASSAADSHHSSLPPWLQIAEFGTSKGLNVKTKDNDVLLDSSEPGPLRKNLDKLSQHLHQQDANVVGFQCGADKKKEDADNCSSKMTDKSPSDYINLNSHVPVGMQMMPASHSSSPFPEVFKAKQEKYTSKLAEIFQKVEDHESGDLRSCNMSNSSVCDGSQMSPTSVTSVTTDLGLGICSSPTSNKLKKPTVQYTMEPPKEIPSLFSSNLNLADGNILKHPSQSSSCLSFDYCGQVDAKNPKFLFEALSKEVSWQDEALQAIIKTIVSSSTKRVKHRGVNQPGDIWMNFVGPDRLGKKKIAVSLAEFLYGSRESFIFVDLSSEEMKGCNAKFRGKTTLDFIVGECCKKPLSVVLLENVDKADILAQKSLSQAIKTGKITDSRGREVSVNNTVFVLSFSDYQNSCISTGEPSNYSEERILKAKGGGIKLRVKHVIGDHRSQSIGVTNKSMDAIPNLNFLSKRKLIGDKEFHDQDILSDTAKRAHTASGWQLDLNLPAEENEQKLTNEGNPEHVTTENKSLWLQNLCDLVDETVVFKPYDFDALVDRLLNVIRGNFKKVLGSECVLQIQTEVMEQLLKAQYVSDRDSEVENWVEKVLCGGFTEIQRRYNLTTGSIVKLATYPEQAPGVHLPPRIILD* 1082
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g1202 1081 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 1 1080 - -
Vra3g1202 1081 Pfam Clp amino terminal domain, pathogenicity island component 153 187 IPR004176 -
Vra3g1202 1081 Gene3D - 671 879 IPR027417 -
Vra3g1202 1081 MobiDBLite consensus disorder prediction 520 539 - -
Vra3g1202 1081 Gene3D - 10 189 IPR036628 -
Vra3g1202 1081 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 690 1022 IPR027417 -
Vra3g1202 1081 ProSiteProfiles Clp repeat (R) domain profile. 8 195 IPR004176 -
Vra3g1202 1081 PANTHER PROTEIN SMAX1-LIKE 8 1 1080 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g1202 Vra-Chr3 12779646 12785097 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g1202 - - gmx:100800606 1766.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g1202 3 12779646 12785097 Vra6g0586 6 5257044 5263846 PCT