Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0570 ATGGCAACAACAATGACAAACTCTGAAGAACCCTCTCTTCCCAACCCTAACAATAACACTCAAAACTCCACCAACGGCGATGCGGAACCTCACCACCACCACGATATTGAAGATGAAGAAGAGGAAGATGACGAATACGACGAGGAGGACGACGTCGTTCAGCAACCGAATCGCAGAATTCCCCAATCCGCAGCGTCCAAGCTGCGCGAGCAGCGTTTCAAGGTGGAAACCCTATCGCGGCGGTTGTCGTCGGAGCTGGTTCCGATCCGAGTGCATGACGTGGTCATAAACGGCAACACTAAGACCAAGGATTGGATTATTGAGGCGGAGCTCGGAGGCATAGAGAACGCCACCAGCATGCAGGAGCTCGTGCAATTTTCGAAAATCGCCATTTCCAGGCTACAGGACCTCGAAATCTTCGATTCCTGCACGGTTCGCCTCGAGGCTGGGCCCCGAGAACTTCCTAACACTGCCAATGTCATCGTCGACGTTGTCGAAACCGGTAACAAAGTTTCAGCCAAATTCAGCGTTTATAACAAACCCTCGACTAGTTCTTGGACAGCTGAAGGTGCTCTTACGTATAAGAACTTCTTGGGCTATGGTGATCTATGGGATGCTTCTTTGGCCTATGGTGCCAACCAAGCGACTGAGGTGAGCATCGGGGTGCGTGCCCCTCGAGTTAGAAGGTTTTTAACTCCCTTTGTGGCACGGCTATCCATGCTTTCCCAAGATTGGCAAGAGACTTCCTCGTACAAAGATCAGTTAGTGGGTGCGTCTCTTGGGTTGATCTCGACCAAGCACCATGACCTAGCATACACTCTTGGATGGCGTACCTTGGCAGATCCATCACAGATGTCATCCAGGTCTATAAGAAGGCAGCTTGGTCATGGTTTAGTGTCTTCTTTGAAGTATACATTTAAAATTGATAGGAGAAATTCTCCTATCAGGCCAACAGAAGGATATGCTTTTCTTTCGTCCACACATGTTGGTGGCCTCACTCCAGATCCCAGGAGCTTGCGGTTTCTGCGCCAGGAGTTTGATGTTCGATTTGCTGTCCCTTTTGGGTTTTACAATACAGCACTAAACCTTGGGATATCTGCTGGTGCTGTTTTTCCATGGGGACATGGATTCAAAACCAAGCCATCTCCCCTTCCAGAAAGGTTTTATTTGGGTGGTGATTTTTCTCCAGTTTGCACCCTAGGAGGGCCAACACCCTTATGGGGATTTAGAACTAGAGGATTAGGTCCTACTGAACCTCGTAGGCTAAATAGAGATGAATCCGATGATGACAACGTTGATTCCTCTGGATGGGACTTCATTGGCGGAGATCTTGCTGTTACTGCTTTTGCTGATCTCTCGTTTGATCTTCCAATTAGGTGGTTGAGAGAATATGGAATACATGGTCATGTTTTTGCTGGTTCTGGGAATGCTGCTAAATTAACTCAGAATGAATTTAAGCACTTCTCTCCTCGGAAGTTCTTGGAATCTTTTCGAGTGTCAGTGGGATGTGGATTTGTTATTCCTACTAGCCTCTTCCGCCTAGAGGGTAACTACGTTTACATACTCAGAAAGGGTGAGCAAGATCGTGGGAAGACTGGATTTAGGTTTAGTTTGTCAGCTCCTTTATAG 1629 0.477 MATTMTNSEEPSLPNPNNNTQNSTNGDAEPHHHHDIEDEEEEDDEYDEEDDVVQQPNRRIPQSAASKLREQRFKVETLSRRLSSELVPIRVHDVVINGNTKTKDWIIEAELGGIENATSMQELVQFSKIAISRLQDLEIFDSCTVRLEAGPRELPNTANVIVDVVETGNKVSAKFSVYNKPSTSSWTAEGALTYKNFLGYGDLWDASLAYGANQATEVSIGVRAPRVRRFLTPFVARLSMLSQDWQETSSYKDQLVGASLGLISTKHHDLAYTLGWRTLADPSQMSSRSIRRQLGHGLVSSLKYTFKIDRRNSPIRPTEGYAFLSSTHVGGLTPDPRSLRFLRQEFDVRFAVPFGFYNTALNLGISAGAVFPWGHGFKTKPSPLPERFYLGGDFSPVCTLGGPTPLWGFRTRGLGPTEPRRLNRDESDDDNVDSSGWDFIGGDLAVTAFADLSFDLPIRWLREYGIHGHVFAGSGNAAKLTQNEFKHFSPRKFLESFRVSVGCGFVIPTSLFRLEGNYVYILRKGEQDRGKTGFRFSLSAPL* 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0570 542 Gene3D membrane protein fhac 88 167 - -
Vra6g0570 542 MobiDBLite consensus disorder prediction 1 26 - -
Vra6g0570 542 Gene3D membrane protein fhac: a member of the omp85/tpsb transporter family 179 540 - -
Vra6g0570 542 MobiDBLite consensus disorder prediction 1 69 - -
Vra6g0570 542 PANTHER SORTING AND ASSEMBLY MACHINERY SAMM50 PROTEIN FAMILY MEMBER 14 537 IPR039910 -
Vra6g0570 542 PANTHER OUTER MEMBRANE OMP85 FAMILY PROTEIN 14 537 - -
Vra6g0570 542 Pfam Omp85 superfamily domain 196 539 IPR000184 GO:0019867
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0570 Vra-Chr6 4992758 4997517 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0570 K07277 - gmx:100802876 907.516
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0570 6 4992758 4997517 Vra6g0570 6 4992758 4997517 ECH
Vra2g1555 2 23440993 23445727 Vra6g0570 6 4992758 4997517 PCT