Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0553 ATGGAAGCTCTCAAGACCATTTTCTTGGCTCTTTTTCTTGTCTTAGCTTCAGCATTGTATTCAGCCAATGCCAAAATCCAGGAGCATGAGTTTGTTATTCAAGCAACACCAGTGAAGAGGCTGTGCAGCACTCACAGCACCATCACTGTTAATGGACAATTCCCTGGCCCAACTTTGGAAGTCAACAATGGAGACACTTTAGTCGTCAAAGTCACTAACAAAGCTCGTTACAATGTCACCATTCACTGGCATGGTATTCGGCAAATGAGAACAGGTTGGGCTGATGGACCAGAATTTGTGACTCAGTGTCCCATTCGCCCTGGTGAGAGTTACACCTATCGTTTCACCATTCAAGGTCAAGAAGGCACACTTTGGTGGCATGCTCATAGCTCATGGCTAAGAGCCACTGTTTACGGTGCTTTAATCATTCACCCCAGAGAGGGAGAGGCATATCCTTTCGCTAAGCCTAAACGCGAGACACCAATTCTTCTAGGGGAATGGTGGGACGCAAATCCGATTGATGTTCTGAGACAAGCCACACAAACAGGAGCAGCTCCGAATATTTCTGATGCATACACCATCAACGGTCAACCTGGCGATCTTTACAAGTGTTCTAGCCAAGGCACCACTGTTGTTCCAATAGATTCTGGTGAGACCAACCTCCTTCGAGTCATCAATGCTGCACTCAACCAACCACTTTTCTTCAGTGTGGCCAACCACAAACTCACAGTGGTTGGTGCCGATGCCTCCTACCTTAAACCCTTCACCACCTCAGTCATCATGCTGGGTCCAGGCCAAACCACCGATGTTCTCATCCAAGGTGACCAACCACCCTCACGCTACTACATGGCTGCACGTGCCTATCAATCCGCACAAAACGCCCCTTTTGACAACACCACAACCACAGCCATTCTCAACTACAAATCTGCACCATGTCCTGCAAAGGGTATCTCCATCAAACCCCTTATGCCCTCTCTCCCAGCTTACAACGACACCAACACAGTCACTGCCTTCAGTAAAAGCTTCAGAAGCCCCAGAAAAGTTGAAGTCCCTGCAGAAATCGATGACGACCTTTTCTTCACCATTGGCCTTGGCCTCAACAATTGCCCTCCAAATTTCAGCCCAAACCAATGCCAGGGTCCAAATGGAACACGCTTCACTGCCAGCATGAACAACGTCTCTTTTGTTCTCCCCAACAACGTCTCCATCTTGCAGGCTCATCACCTTGGAGTCCAAGGAGTGTTCACCACTGACTTCCCTACACAGCCTCCTCTGAAATTTGATTACACTGGTAATGTGAGTCGCTCACTGTGGCAACCCATTCCCGGGACTAAGGTGACCAAGTTGAAGTTTGGATCCAGAGTGCAGATTGTGTTGCAGGACACTAGCATCGTGACCCCTGAGAACCACCCGATTCACCTTCACGGGTATGATTTCTACATAGTAGCAGAAGGGTTCGGAAATTTTGACCCCAAGAAAGACACTTCCAAGTTCAACCTTGTTGATCCACCTATGAGGAACACCGTTGCAGTACCTGTGAATGGATGGGCAGTTATCCGATTTGTTGCCGACAACCCAGGAGCTTGGATTATGCACTGTCACTTGGATGTTCACATCGGGTGGGGTTTGGCCACTGTGCTCTTGGTGGATAATGGAGTTGGGCTGTTGCAGTCCATAGAGGCTCCTCCAGAGGATCTGCCTCTCTGTTAG 1710 0.4877 MEALKTIFLALFLVLASALYSANAKIQEHEFVIQATPVKRLCSTHSTITVNGQFPGPTLEVNNGDTLVVKVTNKARYNVTIHWHGIRQMRTGWADGPEFVTQCPIRPGESYTYRFTIQGQEGTLWWHAHSSWLRATVYGALIIHPREGEAYPFAKPKRETPILLGEWWDANPIDVLRQATQTGAAPNISDAYTINGQPGDLYKCSSQGTTVVPIDSGETNLLRVINAALNQPLFFSVANHKLTVVGADASYLKPFTTSVIMLGPGQTTDVLIQGDQPPSRYYMAARAYQSAQNAPFDNTTTTAILNYKSAPCPAKGISIKPLMPSLPAYNDTNTVTAFSKSFRSPRKVEVPAEIDDDLFFTIGLGLNNCPPNFSPNQCQGPNGTRFTASMNNVSFVLPNNVSILQAHHLGVQGVFTTDFPTQPPLKFDYTGNVSRSLWQPIPGTKVTKLKFGSRVQIVLQDTSIVTPENHPIHLHGYDFYIVAEGFGNFDPKKDTSKFNLVDPPMRNTVAVPVNGWAVIRFVADNPGAWIMHCHLDVHIGWGLATVLLVDNGVGLLQSIEAPPEDLPLC* 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0553 569 CDD CuRO_2_LCC_plant 161 307 IPR034285 -
Vra6g0553 569 ProSitePatterns Multicopper oxidases signature 2. 532 543 IPR002355 GO:0005507
Vra6g0553 569 Pfam Multicopper oxidase 419 551 IPR011706 GO:0005507|GO:0016491
Vra6g0553 569 PANTHER MULTI-COPPER OXIDASE 5 569 IPR045087 -
Vra6g0553 569 Gene3D - 27 157 IPR008972 -
Vra6g0553 569 PANTHER LACCASE 5 569 - -
Vra6g0553 569 SUPERFAMILY Cupredoxins 350 569 IPR008972 -
Vra6g0553 569 SUPERFAMILY Cupredoxins 23 172 IPR008972 -
Vra6g0553 569 ProSitePatterns Multicopper oxidases signature 1. 527 547 IPR033138 -
Vra6g0553 569 Pfam Multicopper oxidase 159 309 IPR001117 -
Vra6g0553 569 TIGRFAM laccase: laccase 24 569 IPR017761 GO:0046274|GO:0048046|GO:0052716
Vra6g0553 569 SUPERFAMILY Cupredoxins 153 345 IPR008972 -
Vra6g0553 569 Pfam Multicopper oxidase 34 147 IPR011707 GO:0005507
Vra6g0553 569 CDD CuRO_1_LCC_plant 29 145 IPR034288 GO:0005507
Vra6g0553 569 Gene3D - 373 569 IPR008972 -
Vra6g0553 569 CDD CuRO_3_LCC_plant 414 552 IPR034289 GO:0005507
Vra6g0553 569 Gene3D - 158 347 IPR008972 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0553 Vra-Chr6 4806938 4810144 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0553 K05909 - gmx:100796956 1136.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0553 6 4806938 4810144 Vra6g0553 6 4806938 4810144 ECH
Vra2g1541 2 23313569 23316534 Vra6g0553 6 4806938 4810144 PCT