Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1541 ATGGAACCTGCCAAGACCATCTTCTTAGCCATCATTTTCCTTCTCTTAACTTCAGCATTGTCTTTAGCAAATGCAAAAATTCATGCGCATGAGTTTGTTGTTGAAGCAACTCCAGTGAAGAGGCTGTGCAAAACACACAATGCCATCACTGTGAACGGCCAATTCCCCGGCCCAACGTTGGAAATCAACAATGGAGATACTTTAGTCGTCAAAGTCACCAACAAAGCTCGTTACAATGTGACCATTCATTGGCACGGTGTTAGGCAAATGAGAACAGGATGGGCAGATGGACCTGAATTTGTGACTCAGTGCCCCATTCGTCCTGGAGGAAGTTACACCTACCGTTTTACCGTTCAAGGACAAGAAGGCACACTTTGGTGGCATGCTCATAGCTCCTGGCTTAGAGCCACCGTTTATGGTGCTTTAATCATTCGTCCCAGGGAAGGAGAACTCTACCCTTTCCCTAAGCCAAACCACGACACACCCATTCTTCTTGGGGAACGGTGGGACGCAAACCCTATTGATGTGGTGAGGCAGGCCACACGAACTGGAGGAGCTCCTAACGTGTCTGATGCATATACCATTAATGGTCAACCTGGTGATCTTTACAAGTGCTCCAACAAAGATACTACCGTTGTTCCGATTCATGCTGGAGAAACAAACCTTCTACGTGTCATCAATGCTGCACTCAATCAACCTCTATTTTTTACCGTCGCAAACCATAAACTTACGGTGGTTGGCGCCGACGCCTCCTACCTCAAACCCTTCACCACCAAAGTCCTCATGTTGGGACCCGGCCAAACCACTGATGTCCTCCTTACCGCAGACCAGGCACCATCTCGCTACTACATTGCGGCGCGTGCTTATCAATCTGCTCAAAACGCTCCGTTTGACAACACCACCACCACCGCAATATTGGAATACAGATCACCTCACCATGGTAACCATTCTCAGTATCATCATTCTAAAGGTGTGAAGAACAAAAGGAGACCTATAATGCCTCCACTCCCTGCTTACAACGACACAAACACCGTCACTGCTTTCAGCAGAAGCTTCAGAAGCCCCAGAAAAGTTGAGGTCCCCACGGAAATCGATCAAAGCCTTTTCTTCGCTGTGGGGTTAGGACTCAACAAATGCCCCAAAAACTTCAAACCAAATAGGTGTCAGGGACCCAATGGGACGAGGTTCACTGCGAGCATGAACAACGTGTCTTTCGTGCTCCCCAACAACGTTTCCATCTTGCAGGCTCAATACCTCGGAATCCCGGGAGTGTTCACGACCGATTTTCCGGGGAAGCCGCCGGTGAAGTTCGATTACACCGGCAACGTGAGCCGTTCATTGTGGCAACCTATTCCCGGGACTAAGGCTCACAAGTTGAAGTTCGGGTCGAGGGTTGAGATTGTTTTGCAGGATACTAGCATTGTTACTCCTGAGAACCACCCTATCCATCTCCATGGCTATGATTTCTACATTGTTGCAGAGGGGTTCGGGAACTTCGACCCCAAGAAAGACAGGGCGAAATTCAACCTTGTTGATCCTCCTTTGAGGAACACAGTGGCTGTCCCTGTAAATGGATGGGCAGTTATTCGATTTGTTGCTGATAATCCAGGTGCATGGCTTATGCATTGTCACTTGGACGTACACATCGGGTGGGGTTTGGCGACGGTGTTGTTGGTGGAGAACGGTGTTGGGAAATTGCAATCCATAGAGCCTCCTCCAGTGGATCTACCTCTTTGTTAG 1740 0.4874 MEPAKTIFLAIIFLLLTSALSLANAKIHAHEFVVEATPVKRLCKTHNAITVNGQFPGPTLEINNGDTLVVKVTNKARYNVTIHWHGVRQMRTGWADGPEFVTQCPIRPGGSYTYRFTVQGQEGTLWWHAHSSWLRATVYGALIIRPREGELYPFPKPNHDTPILLGERWDANPIDVVRQATRTGGAPNVSDAYTINGQPGDLYKCSNKDTTVVPIHAGETNLLRVINAALNQPLFFTVANHKLTVVGADASYLKPFTTKVLMLGPGQTTDVLLTADQAPSRYYIAARAYQSAQNAPFDNTTTTAILEYRSPHHGNHSQYHHSKGVKNKRRPIMPPLPAYNDTNTVTAFSRSFRSPRKVEVPTEIDQSLFFAVGLGLNKCPKNFKPNRCQGPNGTRFTASMNNVSFVLPNNVSILQAQYLGIPGVFTTDFPGKPPVKFDYTGNVSRSLWQPIPGTKAHKLKFGSRVEIVLQDTSIVTPENHPIHLHGYDFYIVAEGFGNFDPKKDRAKFNLVDPPLRNTVAVPVNGWAVIRFVADNPGAWLMHCHLDVHIGWGLATVLLVENGVGKLQSIEPPPVDLPLC* 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1541 579 PANTHER LACCASE 5 579 - -
Vra2g1541 579 PANTHER MULTI-COPPER OXIDASE 5 579 IPR045087 -
Vra2g1541 579 Gene3D - 378 579 IPR008972 -
Vra2g1541 579 CDD CuRO_3_LCC_plant 424 562 IPR034289 GO:0005507
Vra2g1541 579 Pfam Multicopper oxidase 160 309 IPR001117 -
Vra2g1541 579 Gene3D - 158 357 IPR008972 -
Vra2g1541 579 ProSitePatterns Multicopper oxidases signature 2. 542 553 IPR002355 GO:0005507
Vra2g1541 579 SUPERFAMILY Cupredoxins 23 173 IPR008972 -
Vra2g1541 579 Pfam Multicopper oxidase 429 561 IPR011706 GO:0005507|GO:0016491
Vra2g1541 579 CDD CuRO_1_LCC_plant 30 146 IPR034288 GO:0005507
Vra2g1541 579 Gene3D - 16 146 IPR008972 -
Vra2g1541 579 SUPERFAMILY Cupredoxins 361 579 IPR008972 -
Vra2g1541 579 ProSitePatterns Multicopper oxidases signature 1. 537 557 IPR033138 -
Vra2g1541 579 Pfam Multicopper oxidase 34 148 IPR011707 GO:0005507
Vra2g1541 579 CDD CuRO_2_LCC_plant 162 308 IPR034285 -
Vra2g1541 579 TIGRFAM laccase: laccase 25 579 IPR017761 GO:0046274|GO:0048046|GO:0052716
Vra2g1541 579 SUPERFAMILY Cupredoxins 154 355 IPR008972 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1541 Vra-Chr2 23313569 23316534 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g1541 K05909 - gmx:547704 1098.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g1541 2 23313569 23316534 Vra6g0553 6 4806938 4810144 PCT