Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0191 ATGGCAGTGACAGAGGCTCAAAATCCTCTACTTGGGGAAAACACCTGTGGTTCCTTGTTAAAAAAGCTGCAGGAAATATGGGATGAGGTTGGTGAGAGTGATGAGCAACGAGACAAAATGCTTCTTCAGTTAGAACAGGAATGCTTGGATGTGTACAAGAGAAAGGTTGAGCAGGCTGCGAAGTCAAGGGCGCAGTTACTTCAAGCTTTGTCTGATGCTAAGCTTGAGCTTTCCAGTCTTCTATCAGCACTTGGAGAAAAGAGCTTTGCTGGAATTCCTGAGAACCCTTCTGGAACTATCAAAGAACAGCTTGCAGCTATAGCACCTGTACTTGAACAGTTATGGCAACAAAAGGAAGAAAGAATTAAGGAGTTCTCTGATGTACAATCCCAGATCCAACAAATATGTGGAGAGATAGCTGGGAACTTAAACCTTAGTGATGCTTCGCCTGCAGTTGACGAGTCTGACCTCTCCCTCAAGAAATTAGATGAATATCAATCTGAGCTACAAGAACTTCAAAAGGAAAAGAGTGAGAGATTGCACAAGGTTCTTGAATTTGTGAGTACTGTGCATGATCTATGTGCTGTCCTTGGCATGGACTTCTTCAGTACTGTAACGGAGGTACATCCAAGCCTAAATGATTCTACTGGTGTTCAATCCAAGAGCATAAGTAACGACACCCTAGCTAGGTTGGCCAAGACTGTCTTAACGCTGAAAGAAGATAAAAAACAGAGGCTGCAGAAGCTTCAAGAATTAGCTTCTCAGTTGATCGATCTTTGGAATCTAATGGACACTCATCCAGAGGAAAGGAGTCTATTTGACCATGTTACCTGTAATATGTCAGCTTCTGTTGATGAAGTCACTGTCCCTGGTGCTCTTGCTTTGGATCTGATTGAGCAGGCTGAAGTGGAAGTTGAGAGACTTGATCAGCTGAAAGCCAGTAGGATGAAGGAAATTGCTTTCAAGAAGCAAACGGAGCTTGAAGAGATATTTGCCCGTGCTCATGTAGAAATAGACCCAGATGCTGCACGGGAGAAGATTATGGCATTGATTGATTCAGGAAACGTTGAACCAGCTGAATTACTGGCTGACATGGACAATCAGATAGCAAAAGCAAAAGAAGAAGCTTTAAGTCGAAAAGATATATTGGACAAGGTTGAAAAATGGATGTCAGCATGTGAAGAGGAGAGTTGGCTTGAAGACTATAATCGGGATGATAACAGGTATAATGCAAGCAGAGGTGCACACTTAAACCTCAAACGTGCAGAGAAAGCTCGGATATTGGTCAACAAAATTCCAGCTTTGGTAGATACATTAGTTGCTAAAACTCGTGCATGGGAAGAAGATCATGGCATGTCATTCACATATGATGGCGTTCCTCTTCTTGCCATGTTAGATGAATATGCCATGCTCAGGCATGAACGGGAAGAGGAAAAACGGAGGATGAGGGATCAGAAAAAGCACCACGAGCAACGAAACACAGAACAAGAAGCCATCTTTGGTTCAAGACCCAGTCCTGGTAGACCAGTTAGTTCTGGTAAGGTAGGAGGTACTCGTGCTAATGGAGGAGCTAATGGTACACCAAACCGACGGCTGTCACTTAATGCTCATCAAAACGGAAGCAGGTCCACAACAAAAGATGGAAAAAAAGATATCAGACCAGTTGCTCCTGTGAATTATGTTGCCATATCAAAAGAAGATGCTGCTTCCCATGTTTCTGGTACCGAACCAATCCCGGCATCACCCTAA 1749 0.434 MAVTEAQNPLLGENTCGSLLKKLQEIWDEVGESDEQRDKMLLQLEQECLDVYKRKVEQAAKSRAQLLQALSDAKLELSSLLSALGEKSFAGIPENPSGTIKEQLAAIAPVLEQLWQQKEERIKEFSDVQSQIQQICGEIAGNLNLSDASPAVDESDLSLKKLDEYQSELQELQKEKSERLHKVLEFVSTVHDLCAVLGMDFFSTVTEVHPSLNDSTGVQSKSISNDTLARLAKTVLTLKEDKKQRLQKLQELASQLIDLWNLMDTHPEERSLFDHVTCNMSASVDEVTVPGALALDLIEQAEVEVERLDQLKASRMKEIAFKKQTELEEIFARAHVEIDPDAAREKIMALIDSGNVEPAELLADMDNQIAKAKEEALSRKDILDKVEKWMSACEEESWLEDYNRDDNRYNASRGAHLNLKRAEKARILVNKIPALVDTLVAKTRAWEEDHGMSFTYDGVPLLAMLDEYAMLRHEREEEKRRMRDQKKHHEQRNTEQEAIFGSRPSPGRPVSSGKVGGTRANGGANGTPNRRLSLNAHQNGSRSTTKDGKKDIRPVAPVNYVAISKEDAASHVSGTEPIPASP* 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0191 582 Coils Coil 461 492 - -
Vra6g0191 582 Coils Coil 155 182 - -
Vra6g0191 582 Gene3D - 368 502 - -
Vra6g0191 582 Coils Coil 239 259 - -
Vra6g0191 582 PANTHER 65-KDA MICROTUBULE-ASSOCIATED PROTEIN 1 5 582 - -
Vra6g0191 582 MobiDBLite consensus disorder prediction 476 554 - -
Vra6g0191 582 MobiDBLite consensus disorder prediction 522 542 - -
Vra6g0191 582 Pfam Microtubule associated protein (MAP65/ASE1 family) 18 504 - -
Vra6g0191 582 PANTHER PROTEIN REGULATOR OF CYTOKINESIS 1 PRC1-RELATED 5 582 IPR007145 GO:0000226|GO:0008017
Vra6g0191 582 MobiDBLite consensus disorder prediction 476 496 - -
Vra6g0191 582 Coils Coil 298 318 - -
Vra6g0191 582 Coils Coil 49 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0191 Vra-Chr6 1398993 1403744 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0191 13 544 EF-hand Containing Proteins AT5G62250 42.699 9.54e-125 376
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0191 K16732 - gmx:100806071 1040.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0191 6 1398993 1403744 Vra6g0191 6 1398993 1403744 ECH
Vra10g0231 10 6609364 6615865 Vra6g0191 6 1398993 1403744 PCT