Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0188 ATGGCTCCCATGGGAGACAATGTTGTTGTTTCCAACATGGAACTTGAAAGGTTGCTCAGCATGAAAGGAGGCAAAGGAGAAGCCAGCTATGCCAACAATTCCCAAGCTCAGGCCATACATGCGAGGTCGATGCTTCATCTTCTGAGAGAGACTTTGGACAGAGTTGCGCTTGCTGAGGGACGAGAGGTGCCGTTTGTGGTGGTGGACTTGGGCTGTTCGTGTGGGAGCAACACCATAAACGTGGTGGATGTGATCATAAAGCACGTTATGAAACGGTACGAGGCGTTGGGGTGGCAGCCACCGGAGTTTTCAGCTTTCTTCTCAGACCTTCCTAGCAATGACTTCAACACACTCTTTCAGCTGCTTCCTCCTGTCGCCAACTATGGCGTCAGCATGGAAGAATGCCTTGCCGCCGACAACCACCGCTCTTACTTCGCCGCCGGAGTCCCCGGTTCTTTCTACCGGAGGCTTTTTCCGGCGAGGTCTGTGGATGTTTTCCACTCAGCTTTCTCTTTGCACTGGCTTTCTCAGGTGCCAGAAAGTGTTGTGGACAAAAGGTCAAGTGCATACAACAAAGGAAGAGTGTTTATCCATGGTGCTGATGAGAGCACAGCAAATGCTTACAAGAAACAATTCCAAACAGATTTGGCAGGGTTTCTGATGGCAAGGTCAGTGGAGATGAAGAGAGAGGGGTCCATGTTCTTAGTTTGCTTGGCCAGAACTTCAGTGGACCCTACAGACCAAGGTGGGGCAGGCCTTCTTTTTGGGACCCACTTTCAGGATGCTTGGGATGATCTTGTCCAAGAGGGGTTGATTAGTCAAGAAAAACGAGACAGTTTTAACATTCCAGTTTATGCAGCAAGCCTGCAAGACTTCAAGGAGGTGGTTGAAGCGAATGGTTCATTCACCATAGACAAGCTTGAAGTATTCAAAGGAGGAAGTCCACTTGTGGTGAATCAACCAGATGATGCAAGTGAAGTAGGAAGAGCTCTGGCCAACAGCTGCAGGACCGTGTCAGGAGTTCTTGTTGATGCCCACATTGGTGACAAACTAAGTGAGGAACTTTTTCTTAGAGTGGAGCGTAGAGCCACAAGCCATGCCAAAGAGCTATTAGAGCAACTACAGTTCTTTCACATAGTTGCATCCCTTTCCTTTAGAGACTGA 1164 0.4888 MAPMGDNVVVSNMELERLLSMKGGKGEASYANNSQAQAIHARSMLHLLRETLDRVALAEGREVPFVVVDLGCSCGSNTINVVDVIIKHVMKRYEALGWQPPEFSAFFSDLPSNDFNTLFQLLPPVANYGVSMEECLAADNHRSYFAAGVPGSFYRRLFPARSVDVFHSAFSLHWLSQVPESVVDKRSSAYNKGRVFIHGADESTANAYKKQFQTDLAGFLMARSVEMKREGSMFLVCLARTSVDPTDQGGAGLLFGTHFQDAWDDLVQEGLISQEKRDSFNIPVYAASLQDFKEVVEANGSFTIDKLEVFKGGSPLVVNQPDDASEVGRALANSCRTVSGVLVDAHIGDKLSEELFLRVERRATSHAKELLEQLQFFHIVASLSFRD* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0188 387 Pfam SAM dependent carboxyl methyltransferase 57 383 IPR005299 GO:0008168
Vra6g0188 387 Gene3D Vaccinia Virus protein VP39 33 313 IPR029063 -
Vra6g0188 387 PANTHER INDOLE-3-ACETATE O-METHYLTRANSFERASE 1 11 385 - -
Vra6g0188 387 Gene3D - 19 368 IPR042086 -
Vra6g0188 387 PANTHER S-ADENOSYL-L-METHIONINE:CARBOXYL METHYLTRANSFERASE FAMILY PROTEIN 11 385 IPR005299 GO:0008168
Vra6g0188 387 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 13 384 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0188 Vra-Chr6 1386106 1390482 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0188 K18848 - gmx:100807953 736.873
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0188 6 1386106 1390482 Vra6g0188 6 1386106 1390482 ECH
Vra10g0232 10 6630800 6635089 Vra6g0188 6 1386106 1390482 PCT