Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0232 ATGGCAGACAATCTTGTTGTTTCCAACATGGAGCTTGAGAGATTGCTTAGCATGAAAGGAGGCAAAGGTGAAGGAAGCTATGCCAACAATTCCCAAGCTCAGGCCATCCATGCCAAGTCCATGCATCACCTTCTGAAAGAAGCCCTAGATGGAGTTCAACTTCAAAAGCCTAATATCCCTTTTGTGGTTGTGGATTTGGGGTGTTCATGTGGCAGCAACACCATCAATGTGGTGGATGTGATCATCAAGCACATCATCAAACGCTATGAGGCCTTAGGATCAGAACCTCCTGAGTTTTCTGCTTTCTTCTCAGACCTTCCTGGCAATGACTTCAACACCCTCTTCCAGCTCCTTCCTCCCTTGGCCAACTATGGAGTTAGCATGGAGGAGTGCCTTTCCGCCAGCAACCACCGTGCCTACTTTGCCGCCGGCGTCCCTGGCTCCTTCTACAGGAGACTTTTTCCGGCAAGGTTCATTGATGTTTTCCACTCAGCCTTTTCCTTGCATTGGTTATCTCAGGTACCAGAATCTGTGATGGACAAGAGGTCAAGTGCATACAACAAGGGAAGGGTGTTCATCCATGGTGCTAGTGAGATCACAGCAAATGCTTACAGAAAACAATTTCGATCAGACTTGGCTGGGTTCTTGAGTTCAAGGTCTTTGGAACTGAAGAGAGGGGGGTCCATGTTCTTGGTTTGCTTAGGCAGAACTTCTGTGGACCCCACAGACCAAGGTGGGGCTGGCCTCCTATTTGGGACCCACTTTCAGGATGCTTGGGATGATCTTGTCCAAGAGGGATTAATTAGTAGTGAGAAAAGAGACAGCTTCAACATTCCAGTTTATGCACCAAGCCTGCAAGATGTGAAGGAGGTGGTTGAATCTGATGGTTCATTTGCCATAAACAAGCTTGAGGTGTTCAAAGGAGGAAGCCCTCTTGTGGTGAACCAGCCAGGTGATGCTAGAGAAGTAGGAAAGGCCCTTGCCAACACTTGCAGGAGTGTGTCTGGTGTCCTTGTCGAAGCTCACATTGGTGACAAGCTTAGTGAGGAGCTGTTTCTGAGAGTGGAACGTAGAGCAGCAAGCCATGGCAAGGAGTTATTGGAGCAGCTACAGTTCTTTCACATAGTTGCATCCCTTTCTTTTGCTCAATGA 1152 0.4809 MADNLVVSNMELERLLSMKGGKGEGSYANNSQAQAIHAKSMHHLLKEALDGVQLQKPNIPFVVVDLGCSCGSNTINVVDVIIKHIIKRYEALGSEPPEFSAFFSDLPGNDFNTLFQLLPPLANYGVSMEECLSASNHRAYFAAGVPGSFYRRLFPARFIDVFHSAFSLHWLSQVPESVMDKRSSAYNKGRVFIHGASEITANAYRKQFRSDLAGFLSSRSLELKRGGSMFLVCLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVQEGLISSEKRDSFNIPVYAPSLQDVKEVVESDGSFAINKLEVFKGGSPLVVNQPGDAREVGKALANTCRSVSGVLVEAHIGDKLSEELFLRVERRAASHGKELLEQLQFFHIVASLSFAQ* 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0232 383 PANTHER S-ADENOSYL-L-METHIONINE:CARBOXYL METHYLTRANSFERASE FAMILY PROTEIN 8 381 IPR005299 GO:0008168
Vra10g0232 383 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 10 380 IPR029063 -
Vra10g0232 383 Gene3D - 16 362 IPR042086 -
Vra10g0232 383 Pfam SAM dependent carboxyl methyltransferase 59 379 IPR005299 GO:0008168
Vra10g0232 383 Gene3D Vaccinia Virus protein VP39 30 309 IPR029063 -
Vra10g0232 383 PANTHER INDOLE-3-ACETATE O-METHYLTRANSFERASE 1 8 381 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0232 Vra-Chr10 6630800 6635089 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0232 K18848 - gmx:100801476 712.605
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra10g0232 10 6630800 6635089 Vra6g0188 6 1386106 1390482 PCT