Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0186 ATGACACCCTCAACCTGTTTCCTTCTTCTATTCCTTCTGCTCCTTTCATCCTCCACGAGTGGTGTTCAACATCATGAAGAGGGGTTCATCTCTATCACCATATCTGATAAGGGTCTCGATTTTGCCAAGGATATTCTGATAGACCAAGCTGTTGACTCTATTACTCTGTCTCAATTGCCAGATATTGAGGAGACTGTTCAAGTCCCTCTTGTTGGAAAAGCCAGAGTTGTTCTCTCTGAAATCACTATCAATGATATCCAAGTAAATTCTTCATCTGTTAATACAGGAGAAACAGGCATTGCTGTTGTTGTTTCAGGTGCCACAGCTAACTTGAGTTTGAAGTGGAGGTACTCTGTCAGCAGTTGGTTAGTCCCAATTGGAATTTCTGATAGTGGAACAGCAACTGCAAAGGTTAATGATTTGCAAGTTGGACTTACTGTGAATTTAACGAATCAAGAAGGAACTCTTAAGCTGCTTCTCCTGGATTCTGGATGCCATGTTAGAGATTTATCCATAAAGTTACATGGTGGAGCAGCTTGGCTTTACCAAGTGCTAGTAGATGCTTTTGCAGGAAGTATAGCATCTGGAGTTGAAGAGGCAGTTTCTGATCAAATAAATGAGGGGATATCAACTCTTGATGTTTTATTACAATCTCTTCCAAAGACTTTCCCAATAGACGAAACAGCTGCTCTAAATGTTTCTTTCGTGAACAATCCTGAGCTAAGTGATTCTGCTATTGAATTAGAAATTAGTGGTTTATTCATAGGAAGGAATGAAATTTTGTCACCTCGAGGTTACCGCAGAGGTTCAGACGTTTCTGTTTCCCGTGCCAACTCTTCGCCAAAGATGATAACAATTTCGTTACATGAAAATGTTTTCAAATCCGCTTCCTTGGTTTACTTCACTGCAGATACTTTGAAATGGACTGTTGATGAACTGCCTGATCAGAACCTTCTGAATACTGCTGAATGGAGATTCCTTATTCCTCAGTTATACAAGCAATATCCAAACGATGACATGAATCTTGATGTCTTTGTGTCTTCTCCACCGGATATACAACTGACAAACAAAGATGTTGGTGTCCAAATTTCCATAGATATAATACTTAATGTTCTTGAAGCTGGTGAAGTCGTACCTGTTGCATGCATCTCGGTGGATTTGAGTGCATCTTGTGCTGCGGAGATCATAGGAAACAATCTTGCTGGTTGGCTTAAATTGAAAAAGTTTTCGACATACTTGAAATGGAGTAAAATAGGGAAACTGCACTTGAATCTGATTCAGTCAGTGACATCAGCTGTCCTCAAAACCGTTCTCATACCATACCTGAACTCACAGTTAGTGAGGGGAATTCCACTGCCAATTCTTAATGATTTTGCTCTTGAGAATGCTCGTATATTGTATTCTCCCCCATGGATTACTGTGTCCAGTGATGTTTCTTTCTTAGGACACTATCATCACAAGCATCTACCAGCATATGTATCATAA 1485 0.3993 MTPSTCFLLLFLLLLSSSTSGVQHHEEGFISITISDKGLDFAKDILIDQAVDSITLSQLPDIEETVQVPLVGKARVVLSEITINDIQVNSSSVNTGETGIAVVVSGATANLSLKWRYSVSSWLVPIGISDSGTATAKVNDLQVGLTVNLTNQEGTLKLLLLDSGCHVRDLSIKLHGGAAWLYQVLVDAFAGSIASGVEEAVSDQINEGISTLDVLLQSLPKTFPIDETAALNVSFVNNPELSDSAIELEISGLFIGRNEILSPRGYRRGSDVSVSRANSSPKMITISLHENVFKSASLVYFTADTLKWTVDELPDQNLLNTAEWRFLIPQLYKQYPNDDMNLDVFVSSPPDIQLTNKDVGVQISIDIILNVLEAGEVVPVACISVDLSASCAAEIIGNNLAGWLKLKKFSTYLKWSKIGKLHLNLIQSVTSAVLKTVLIPYLNSQLVRGIPLPILNDFALENARILYSPPWITVSSDVSFLGHYHHKHLPAYVS* 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0186 494 Gene3D - 31 465 - -
Vra6g0186 494 PANTHER OS06G0309200 PROTEIN 1 494 IPR045897 -
Vra6g0186 494 Pfam LBP / BPI / CETP family, C-terminal domain 278 478 IPR001124 GO:0008289
Vra6g0186 494 Pfam LBP / BPI / CETP family, N-terminal domain 38 212 IPR017942 GO:0008289
Vra6g0186 494 Gene3D - 37 217 - -
Vra6g0186 494 PANTHER LBP/BPI/CETP FAMILY, CARBOXY-TERMINAL DOMAIN PROTEIN 1 494 - -
Vra6g0186 494 SUPERFAMILY Bactericidal permeability-increasing protein, BPI 32 242 IPR017943 GO:0008289
Vra6g0186 494 SMART bpi2_2 278 483 IPR001124 GO:0008289
Vra6g0186 494 PIRSF Lipid_binding_protein 5 485 IPR030675 GO:0005615|GO:0008289
Vra6g0186 494 SUPERFAMILY Bactericidal permeability-increasing protein, BPI 245 480 IPR017943 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0186 Vra-Chr6 1367914 1371386 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0186 K05399 - gmx:100804747 801.586
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0186 6 1367914 1371386 Vra6g0186 6 1367914 1371386 ECH
Vra10g0233 10 6643605 6647227 Vra6g0186 6 1367914 1371386 PCT