Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0233 ATGGCACCCTCTATTATTTTGTCTGTGTTGTGCCTTCTCTTGGTTTTGACATGTGGTTATGAGCAACCCCTTGAAGAGGGTTTCATCTCTGGGGTCATATCTGACAAGGGTCTTGAATATGCCAAGGAGTTGCTGATAGAGAAGGGTATTGCTTCCATTCTTATGCTTCAGCTGCCAGAGATTGAAAATTCTGCACAGGTTCCTCTTGTTGGAAATGCTAAAGTGGTTCTTTCTAACATCACAATTACGGATGTTCAGGTCAATTCTTCATCCGTTAAGACGGGAGAGAATGGAATTGTTCTTGTTGTTTCAGGTGCCATTGTTAATTTAAGTATGAGGTGGAGGTACACTGTCAGCTCTTGGTTAATTCCAATTGGAATTTCGGATAAAGGAACTGCTTCAGTGAAGGTTACAGGTATGCAAGTGGGGCTTACAATAAATTTAAGGAACCAAGAAGGAAGTCTGAAGTTGTCTCTCTTAGATTATGGATGTTATGTGGGAGACATGTCTATAAAGTTGGACGGAGGTGTATCTTGGCTTTACCAACTGCTAGTAGATGCTTTCGAAGGGAATATAGCTTCTGCCATTGAAGAGGGCATTTCGGAGAAAATAAAAGAAGGGATAGTGAAGCTTGACAATTTTTTGGAATCTCTTCCAAAGAATATCTCACTAGACAAAACTGCTACACTAAATGTATCTTTTGTTGGAAATCCTGTGTTGAGCAGTTCCTCCATTGCAATTGCAATTAATGGTTTATTCACAGAGAAAAAGGAAGTTTTAGTACCTCAAGGTTACCACCAGAAAGAATTGAAGGTTTCTGCTGCCTGTGGTGGTTTACCAAAGATGATAAAAGTATCAATACATGAAAATGTGTTCAAATCTGCTTCCCAAGTTTACTTCAATGCAGGTAAAATGCAATTGATTGTTGATGAACTTCCTGATCAGGCCATTTTGAACACTGCTGAATGGAGATTCATAGTTCCCGAATTATACAAGCGATATCCAAATGATGACATGCAGCTTAACATCTCTATGTCTTCTCCACCAGTTATACAAGTGACATATCAAGATGTTGGTGCAACTATTCTTGTAGATATAACTGTTGAGGTTCTGGAAGATTTTGAAGTCATACCTGTTGCATCCATCTCAGTGGAAATCAGTGCTTCATGTGCTGTAGAAATTGTAGGAAATGACATTGTGGGTAGGCTCACATTACAGGAATTTTCTACATACTTGAAATGGAGCAAAATAGGGAAACTGCACATGCTTCTGATTCAGTCACTAATGTCAAGTGTCCTCAAAACTGTTGTCCTTCCATACTTGAACTTCAAATTAAAGAGAGGATTTCCATTACCAATTATTGATGGTTATGGCTTTCAGAATGCTATCATCTTGTACAACCATCCATGGATTGCAGTGTGTAGTGATGTTTTCTTCTTAGAAGATTACTATTTCGGTCAACAATCATCTTCAGCTTATGTTTCATAG 1488 0.3864 MAPSIILSVLCLLLVLTCGYEQPLEEGFISGVISDKGLEYAKELLIEKGIASILMLQLPEIENSAQVPLVGNAKVVLSNITITDVQVNSSSVKTGENGIVLVVSGAIVNLSMRWRYTVSSWLIPIGISDKGTASVKVTGMQVGLTINLRNQEGSLKLSLLDYGCYVGDMSIKLDGGVSWLYQLLVDAFEGNIASAIEEGISEKIKEGIVKLDNFLESLPKNISLDKTATLNVSFVGNPVLSSSSIAIAINGLFTEKKEVLVPQGYHQKELKVSAACGGLPKMIKVSIHENVFKSASQVYFNAGKMQLIVDELPDQAILNTAEWRFIVPELYKRYPNDDMQLNISMSSPPVIQVTYQDVGATILVDITVEVLEDFEVIPVASISVEISASCAVEIVGNDIVGRLTLQEFSTYLKWSKIGKLHMLLIQSLMSSVLKTVVLPYLNFKLKRGFPLPIIDGYGFQNAIILYNHPWIAVCSDVFFLEDYYFGQQSSSAYVS* 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0233 495 Gene3D - 36 216 - -
Vra10g0233 495 PANTHER LBP/BPI/CETP FAMILY, CARBOXY-TERMINAL DOMAIN PROTEIN 1 494 - -
Vra10g0233 495 Gene3D - 32 463 - -
Vra10g0233 495 SUPERFAMILY Bactericidal permeability-increasing protein, BPI 244 478 IPR017943 GO:0008289
Vra10g0233 495 PANTHER OS06G0309200 PROTEIN 1 494 IPR045897 -
Vra10g0233 495 SUPERFAMILY Bactericidal permeability-increasing protein, BPI 33 241 IPR017943 GO:0008289
Vra10g0233 495 SMART bpi2_2 277 482 IPR001124 GO:0008289
Vra10g0233 495 PIRSF Lipid_binding_protein 6 483 IPR030675 GO:0005615|GO:0008289
Vra10g0233 495 Pfam LBP / BPI / CETP family, N-terminal domain 37 209 IPR017942 GO:0008289
Vra10g0233 495 SMART bpi1_3 33 258 IPR017942 GO:0008289
Vra10g0233 495 Pfam LBP / BPI / CETP family, C-terminal domain 275 462 IPR001124 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0233 Vra-Chr10 6643605 6647227 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0233 K05399 - gmx:100815362 810.446
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra10g0233 10 6643605 6647227 Vra6g0186 6 1367914 1371386 PCT