Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0163 ATGCAGACGTCGTCGAAGACCATCTCTGCGGCTCTGCAACTGGTGGACGCCAAGAAAGAGAATTTGAAGAAAGCCTACGACGATCTCCAATCCCATTCCTCTCTCCTCTCTTCCTCCTTCTTCCTTCCTTCTTGGTCCCACATCGACTCCCACTTCACCTCCATGCACAACTCCCTCTCTGAACGATTTCACCTTCTTCAGACACTCGAATCCCAAGAGCAGCACACTCACCCACCTTCCTCTCCCTCCAAAGATCCCACCTTTCCACCCTCCCGTTCCGACCCATCATCGCAAAACGACGTCGCATTGCCCAAACCCCACGCGGAACGCATTATCGCCCTCTGCAGCAGCGTGGACGGAAAAGGGTTGCGGGACTATGTTGGGGATCATTTCAAAGAGAAGGTTGCGTTCGAGGTTGACATTCAGACTGCCCTCAAGCGTGCTTCCGATCCCGCTTCGATGATTCTCGATGCACTGGACGGTGTCGTGGGTGCGAATGTGGTGAAAGATGATAAGGAATTGCGCAAAAGGAAGCGGACTTGTGGGTTCCTGTTTCAGCAGTTGAGGGCTGCGTCCGTTTATGTGAGTTTTGATGTGCTTAAGAGAGCAAGGAGGTTGTGTGTGGAGTGGAAGGGGAGCTTGCCCAGTGAAGGTGGTGAAGGTGTTGGGGCCATGACTTTCTTGCAGTTTGTGGCGGCTTATGGGTTGTTCTCTGAATTGACAGATAATGAGATTGTCACTTTCTCTGCCATGGCTGCTGGTAATGATGATCTTCCTGAGCTCTACCGAAGTATGGGTTTAACGGAGAAAGTCCCAGGTCTTATTCAGAAACTTGTTGACAGGTGCAGACATATTCTGGCTGTCAAGTATATTTTTGAGTTCAATCTTGCGGATAAGATTCCACCGATTCCCATTTTGAAAGCTCACGTGAATGAATCTCAGAAACTTGCTAAAAAACTTTCTGAGGAAGGGAAGTCACCAAATGAAATCATAGCCAGAGAAGTCCATGCTCTGAAATCGGCAATCAAGGTTATTGAAAGTCATAATCTTCAATCGCAATATCCACCTGAAAGCCTTCAGCAGCGTTTAGAACAATTGACAAAGCAAAAGACAAATTTAAAATATGCTGCATCGGCTTTTTCTGCAAGGCCCCCCTCTCATCAGCAGCAACAAAGTGCGATCAAGCGTCCTCGAATTTCTGCCCCCATTGGTTCTGCAGCTGTCCTGAATAGTGTCGGTGGTGCCAGTTCAACTGCTCACCACTACAAACATCCTCATTTCCAGTCATCAGGTTTGTTGCCGGAGCAACAACCTTTTTTCCGTTCACCAGGTTTGTTGTTGGAACAACAACCTCATTTCCAGTCATCAGGTTTGTTGCCTGATCAACAACCTCGTTTCCAGTCACCAGGTTTGTTGCTGGAACATCGAAGTCCCTACATTAACTTGCCAACCATGTCATATGGCATGAATGCTCAAACCCCAACCATCTTGCCTTATACAGGCGCTGCAACTGGGCCTTATGGTCTTGGTGATGTCCCAATGGGTTCCAGTGGTAACCTTGGTCAACGTGGTTCTCTTCCAAATTCATCAGAGCCTGGTTTTCATGATAGTGTCTCTGCCTATGGTGGTTATGGTCTGCAGCGCTATCATCGAACATCTTATCCTCAGTAG 1671 0.4817 MQTSSKTISAALQLVDAKKENLKKAYDDLQSHSSLLSSSFFLPSWSHIDSHFTSMHNSLSERFHLLQTLESQEQHTHPPSSPSKDPTFPPSRSDPSSQNDVALPKPHAERIIALCSSVDGKGLRDYVGDHFKEKVAFEVDIQTALKRASDPASMILDALDGVVGANVVKDDKELRKRKRTCGFLFQQLRAASVYVSFDVLKRARRLCVEWKGSLPSEGGEGVGAMTFLQFVAAYGLFSELTDNEIVTFSAMAAGNDDLPELYRSMGLTEKVPGLIQKLVDRCRHILAVKYIFEFNLADKIPPIPILKAHVNESQKLAKKLSEEGKSPNEIIAREVHALKSAIKVIESHNLQSQYPPESLQQRLEQLTKQKTNLKYAASAFSARPPSHQQQQSAIKRPRISAPIGSAAVLNSVGGASSTAHHYKHPHFQSSGLLPEQQPFFRSPGLLLEQQPHFQSSGLLPDQQPRFQSPGLLLEHRSPYINLPTMSYGMNAQTPTILPYTGAATGPYGLGDVPMGSSGNLGQRGSLPNSSEPGFHDSVSAYGGYGLQRYHRTSYPQ* 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0163 556 MobiDBLite consensus disorder prediction 518 535 - -
Vra6g0163 556 PANTHER FRIGIDA-LIKE PROTEIN 3-RELATED 5 438 - -
Vra6g0163 556 PANTHER FRIGIDA-LIKE PROTEIN 3-RELATED 465 551 - -
Vra6g0163 556 PANTHER FRIGIDA-LIKE PROTEIN 465 551 - -
Vra6g0163 556 PANTHER FRIGIDA-LIKE PROTEIN 5 438 - -
Vra6g0163 556 Coils Coil 12 32 - -
Vra6g0163 556 MobiDBLite consensus disorder prediction 71 102 - -
Vra6g0163 556 Pfam Frigida-like protein 109 376 IPR012474 -
Vra6g0163 556 MobiDBLite consensus disorder prediction 513 539 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0163 Vra-Chr6 1188096 1190977 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0163 - - gmx:100808558 699.508
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0163 6 1188096 1190977 Vra6g0163 6 1188096 1190977 ECH
Vra10g0271 10 7162592 7166767 Vra6g0163 6 1188096 1190977 PCT