Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0158 ATGGATATTTCTCGCTGTACACGGATTGTCTTTGATAAAATTCATAAATTTGAGCCAGAGTATGCTAGAAAGATAATTGGTTATCTCCTCCTACAAGACCATGGTGAACTAGAAATGGCAAAATTGGCTTCTTACCCCGACTATTACATCCGTGAAGTGGCATTTCAGGCCAAAAGGGAGCTTCTAAGATTGTCTGCAAAACCACCAGATATGCTCCCAATTTCACATATGGTCAACCCTCAACAAGGTTATAGCCATTTAGCACTAATGTCTCCTCGAACTCCTACTACACCAAACTTTCCTCCTCCTCTCTATTGGGATCCACAACCTGTTGGCAATATCAATCCAGAGTTTATGGCAATGAATTACATGGATTCTGTCATTGAGCTTCAGAAGCAGACACAATTGTGCAGTTTGGAGAATCATGTCGATGCTGTAAAGACTGGAACGGTAGGGGTTGCCAACGGGAGAAGGTTTTCTGAATATCCAATGAAAGTTTGTCACTATTTCAACAAAGGATTCTGCAAACATGGAAATAACTGCAGATTCTATCATGGGGAAGTTGGCCCTGAGATGTATGGAAGTGATGCTAGTGGTGAGGATCAGGTGATCTCCCCAGGGTCACTAGCACAGCTAGAGAAAGAAATTATTGAGCTTCTAAGATCTAGGAATGATGCAATATCCATTGCTTCTCTGCCAATGGCCTACTATGATAGGTATAAGAAGGTACTGCAAGCAGATGGTTATTTAACTGAGAGCCAAAGACACGGTAAGTCTGGCTATAGTTTAACAAAGCTTCTTGCGCGACTGAAAAATAGTATTCGGCTAATAGTGAGACCTCATGGGCAGCATTCAGTGACTCTAGCAGAAGATGCTCCCACACAAATGAAGAAGGGAGAGTTTCCTCGAAATATCAGTGCTTCACGACAGATATATCTGACATTCCCAGCTGACAGCACTTTCACAGAGGATGATGTCTCAAACTACTTCAACACATTTGGGCCTGTTGCAGATGTTAGAATTCCGAACCAGCAGAGAAGGATGTTTGGATTTGTGACATTTGCTCATTCAGAAACGGTCAAAACTCTTTTGGATAAAGGAAACCCTCATTGTGTTCGGGGTTCTCGGGTTCTTGTGAAACCTTACCGGGAGAAAGCAAAGATTAATGAAAGGAAGTACACAGATAGACTTGAACACACGGTTTGTTTTTCACCACATTGTGTAGATACGGATTCTGAACTTAACTCAACTCCAAGAAGTTTGGGGAACCATAGATCTTTTAGGAGGCAGCTGCAAGAGCAAGAACAGGCCCTGGAACATGAGAGGAGAAACCTTGCACAACTGCAGTTTTCCTCACAACCTTTATCCAGTTCACCTCATTTTGGTTTCTCCTTGGATGAGACAAAAGTTTCAGATGATCACTTCAATCTTCAGCCACCAGAAGAATCTTTCCGTTTTCCACTGCATGCCAAATCCATACATACAGACGACAATTTCTCTGATGAGGAAAGCTGGGGTTACCCCTTTTGTGGTGGCAGGGATCGAATTTCGCAAAAGAATTATAGCTCAACAAAGATGTGA 1581 0.4238 MDISRCTRIVFDKIHKFEPEYARKIIGYLLLQDHGELEMAKLASYPDYYIREVAFQAKRELLRLSAKPPDMLPISHMVNPQQGYSHLALMSPRTPTTPNFPPPLYWDPQPVGNINPEFMAMNYMDSVIELQKQTQLCSLENHVDAVKTGTVGVANGRRFSEYPMKVCHYFNKGFCKHGNNCRFYHGEVGPEMYGSDASGEDQVISPGSLAQLEKEIIELLRSRNDAISIASLPMAYYDRYKKVLQADGYLTESQRHGKSGYSLTKLLARLKNSIRLIVRPHGQHSVTLAEDAPTQMKKGEFPRNISASRQIYLTFPADSTFTEDDVSNYFNTFGPVADVRIPNQQRRMFGFVTFAHSETVKTLLDKGNPHCVRGSRVLVKPYREKAKINERKYTDRLEHTVCFSPHCVDTDSELNSTPRSLGNHRSFRRQLQEQEQALEHERRNLAQLQFSSQPLSSSPHFGFSLDETKVSDDHFNLQPPEESFRFPLHAKSIHTDDNFSDEESWGYPFCGGRDRISQKNYSSTKM* 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0158 526 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 320 375 IPR000504 GO:0003723
Vra6g0158 526 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 309 384 IPR000504 GO:0003723
Vra6g0158 526 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 163 187 IPR000571 GO:0046872
Vra6g0158 526 ProSiteProfiles Zinc finger C3H1-type profile. 161 188 IPR000571 GO:0046872
Vra6g0158 526 Gene3D - 157 226 - -
Vra6g0158 526 SUPERFAMILY RNA-binding domain, RBD 319 391 IPR035979 GO:0003676
Vra6g0158 526 ProSiteProfiles OST-type HTH domain profile. 208 290 IPR025605 -
Vra6g0158 526 SMART rrm1_1 310 380 IPR000504 GO:0003723
Vra6g0158 526 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 1 503 - -
Vra6g0158 526 Pfam OST-HTH/LOTUS domain 208 286 IPR025605 -
Vra6g0158 526 SMART c3hfinal6 161 187 IPR000571 GO:0046872
Vra6g0158 526 Coils Coil 424 451 - -
Vra6g0158 526 CDD RRM_AtC3H46_like 311 380 IPR034365 -
Vra6g0158 526 SUPERFAMILY CCCH zinc finger 161 187 IPR036855 GO:0046872
Vra6g0158 526 Gene3D - 310 389 IPR012677 -
Vra6g0158 526 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) 1 503 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0158 Vra-Chr6 1157215 1168136 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0158 - - gmx:100818984 762.296
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0158 6 1157215 1168136 Vra6g0158 6 1157215 1168136 ECH
Vra10g0274 10 7213840 7217542 Vra6g0158 6 1157215 1168136 PCT