Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0274 ATGGATATTTCAGAGTACACAGGTATAGTTTTAGGTAAACTTCAGAAATTTGAGCCAGAGAACGCCTCAAAGATCTTAGGGTATCTCCTTGTCCAAGAACATGGGGAAGAAGAAATGGCGAAATTGGCTTCACTCCCTGACCATTTAATCCGTGAAGTGGCGTTCCAGACCAGAACCAAGCTTCCAAGGTCAGCTGCCAGATCAATCATTCCTCCAATTTCACCTCCCATGAACTGTCAACCAGGTTTTTCCCCTACTTCAGTAATCACACCTGACACCCCTACCACAGCGGCAAGCTTCCAGGTTCAATCTCCCTTCTGGGATCCTCAGTCTGTTAACAATGCCAATGCAGAATATATGGCACAGGGTTTTTTGGATTCCATCTCTGAATTTCAAAAGCAAACTCCGTACTTCACTCTGGAGAATCATATGGATGCTGTAAATTCTCGTGCTGTTGGGACTTCAGGCACTCCAAGTATTGCTAATGATTACTATGGCTTAGATGCTTTATCAGCTGGTAATTTGGGTGGAAAAGCTGGTAGAAGGTTTGACCATCCAGTCAAGACCTGTCACTACTTTAACAAAGGATTTTGTAAGCATGGAAATAGCTGTAGATACTATCATGGACTGGGGGCCCCTGATGCATTCCCTCACATGTATGGAAATGATAGTTTTAATGATGATCAGATGATTTCACCTGGGTCATTGGCACAACTAGAGTCTGAAATTGTTGAACTCCTGAAACTGAAAAAGGGTGGTTCTATATCAATTGCTTCCCTCCCAATGGCATACTTTGAGAAGTATAAGAAGGTGCTGCAGGCTGATGGCTACCTCACTGAGAGCCAGAGACATGGAAAATCTGGCTACAGTTTGACTAAGCTTCTTGCACGGTTGAAAAATAGCATTAGGCTAATTGACAGGCCTCATGGGCAGCATTCGGTTGTTCTGGCTGAAGATGCTCCGAAGTTCAATGGAAAGGGAGATTATGGTAGATACATCAGTGCATCACGACAGATATACCTGACATTTCCAGCTGACAGCACTTTTAGCGAGGCTGATGTTTCAAACTACTTTAGCACTTTTGGGAAAGTTGAAGATGTAAGGATTCCAAGCCAAGAGAGAAGGATGTTTGGATTTGTGACATTTGATGATCCTGAAACTGTTAAAGCAATTTTGGATAAGGGAAATCCCCATTATGTCTGCGAATCACGGGTTCTTGTGAAACCTTACAAAGAGAAGCCAAAACTTATGCTGAGAAAGCACTCAGACAGAATTGAGCACCAGCACCCTGCTTATTACTCAGCACACTACGTAGATGTTGACAATGAACCTACGCCAATTCCAAGAGGTTGCAGTAACCCTCGATTACTCAGGAGCCTGATCATTGAACAGCAAGAGGAGGCTGCCTTTGAATTTCATAGAAGACGTTTTGCAGAGCTGCAGTTGGCCCAAAAATCTTTTACCACTTCACCCCATTTAGGCTTTAACACTGGCGGAGCAAAACCTTCAAATGATCCTTTCAATGTCCATTCTGCAGAATCTCAGAATCATGTTGTGAATGACAAATCCGGATATATGGATAACAATTACACTGCTGAGGACAGCAATCAAGGACTGAATCTCCCAGACAGCCCATTTTCATTTCCAGTAGATAGTGGAATTTCAGCAGTAATTTAG 1677 0.4305 MDISEYTGIVLGKLQKFEPENASKILGYLLVQEHGEEEMAKLASLPDHLIREVAFQTRTKLPRSAARSIIPPISPPMNCQPGFSPTSVITPDTPTTAASFQVQSPFWDPQSVNNANAEYMAQGFLDSISEFQKQTPYFTLENHMDAVNSRAVGTSGTPSIANDYYGLDALSAGNLGGKAGRRFDHPVKTCHYFNKGFCKHGNSCRYYHGLGAPDAFPHMYGNDSFNDDQMISPGSLAQLESEIVELLKLKKGGSISIASLPMAYFEKYKKVLQADGYLTESQRHGKSGYSLTKLLARLKNSIRLIDRPHGQHSVVLAEDAPKFNGKGDYGRYISASRQIYLTFPADSTFSEADVSNYFSTFGKVEDVRIPSQERRMFGFVTFDDPETVKAILDKGNPHYVCESRVLVKPYKEKPKLMLRKHSDRIEHQHPAYYSAHYVDVDNEPTPIPRGCSNPRLLRSLIIEQQEEAAFEFHRRRFAELQLAQKSFTTSPHLGFNTGGAKPSNDPFNVHSAESQNHVVNDKSGYMDNNYTAEDSNQGLNLPDSPFSFPVDSGISAVI* 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0274 558 SUPERFAMILY CCCH zinc finger 184 209 IPR036855 GO:0046872
Vra10g0274 558 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 337 413 IPR000504 GO:0003723
Vra10g0274 558 ProSiteProfiles Zinc finger C3H1-type profile. 184 211 IPR000571 GO:0046872
Vra10g0274 558 SMART rrm1_1 338 408 IPR000504 GO:0003723
Vra10g0274 558 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 349 396 IPR000504 GO:0003723
Vra10g0274 558 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 189 209 IPR000571 GO:0046872
Vra10g0274 558 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) 1 558 - -
Vra10g0274 558 SUPERFAMILY RNA-binding domain, RBD 348 432 IPR035979 GO:0003676
Vra10g0274 558 CDD RRM_AtC3H46_like 339 408 IPR034365 -
Vra10g0274 558 Pfam OST-HTH/LOTUS domain 235 314 IPR025605 -
Vra10g0274 558 Gene3D - 182 247 - -
Vra10g0274 558 ProSiteProfiles OST-type HTH domain profile. 235 318 IPR025605 -
Vra10g0274 558 Gene3D - 341 415 IPR012677 -
Vra10g0274 558 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 1 558 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0274 Vra-Chr10 7213840 7217542 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0274 - - var:108341215 1070.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra10g0274 10 7213840 7217542 Vra6g0158 6 1157215 1168136 PCT