Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0146 ATGTTGAGAAGGCACTCCCTTCTGAGTTCAACACCAAAACAAGTGTCCCTCTTTTTTGTCAGCCATTTCCATTCCACCCTTTTCACTCCATCACCAAAACAAGTGTTCCAAACCCATCATCGTTGGTGGGGTTACCCCAAAAGCTTCAAACCAAGTTTCAACTCCTCCTCACCCTTTTGCAGACACAAAGCCAGCACCTTGCACAGTGGTTCCTCTGTAGAACAAATTGAAGATGTTGAAGTTGCTGATGTCTGGATGAAAATGAAGGATGAAGCAAGATTTGATGTCACTGTGGAACCCATCTTGTCAGGTTACTACAACACTTCCATTCTCTCTCACAAATCATTAGAAACGGCGTTGGCCAATCACCTTGCCGTCAAACTCAGCAATGCATCCCTTCCTTGCAGCACCCTTTCTGATCTTTTTGTCACGGTTTTGGAAACTGACGAAGCCATCATGGCTGCTGTGAAGAGTGATCTGATTGCAGTTAAGGAGAGAGACCCGGCATGCCTGAACCTCGTGCACTGCTTCTTGAATTTCAAAGGCTTTCTGGCGTGTCAAGCTCACAGGGTGGCTCACAAACTGTGGCTGCAGAGAAGGAAGGTTCTTGCTGTGATGATTCAGAACCGGGTTTCTGAGGTTTTTGCGGTGGATATTCATCCGGGGGCTAAGATTGGAAGTGGGATTTTGCTGGATCATGCAACTGGGATTGTGGTGGGAGAGACGGCTGTGATAGGGAACAATGTGTCAATTCTGCATAGTGTGACATTGGGAGGGACTGGTAAGATTTCTGGAGACAGGCACCCAAAAATTGGTGATGGGGTTCTGATAGGTGCTGGAACTTGTATTTTGGGGAATATTAAGGTTGGTGAAGGGGCAAAGATTGGTGCTGGTTCTGTTGTCATCAAGGATGTTCCTCCAAGGACTACAGTTGTTGGTAACCCAGCCAAGCTGGTAGGAGGAAAGAACAACCCTGTTAAGTTGGATAAGATTCCCAGCTTAACCATGGACCATACTTCTCATATTTCTGATTTCTATGATTATTGTGTTTAG 1053 0.4596 MLRRHSLLSSTPKQVSLFFVSHFHSTLFTPSPKQVFQTHHRWWGYPKSFKPSFNSSSPFCRHKASTLHSGSSVEQIEDVEVADVWMKMKDEARFDVTVEPILSGYYNTSILSHKSLETALANHLAVKLSNASLPCSTLSDLFVTVLETDEAIMAAVKSDLIAVKERDPACLNLVHCFLNFKGFLACQAHRVAHKLWLQRRKVLAVMIQNRVSEVFAVDIHPGAKIGSGILLDHATGIVVGETAVIGNNVSILHSVTLGGTGKISGDRHPKIGDGVLIGAGTCILGNIKVGEGAKIGAGSVVIKDVPPRTTVVGNPAKLVGGKNNPVKLDKIPSLTMDHTSHISDFYDYCV* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0146 350 SMART SATase_N_2_a 84 188 IPR010493 GO:0005737|GO:0006535|GO:0009001
Vra6g0146 350 ProSitePatterns Hexapeptide-repeat containing-transferases signature. 277 305 IPR018357 GO:0016740
Vra6g0146 350 CDD LbH_SAT 215 315 IPR045304 -
Vra6g0146 350 Pfam Serine acetyltransferase, N-terminal 84 188 IPR010493 GO:0005737|GO:0006535|GO:0009001
Vra6g0146 350 PANTHER SERINE O-ACETYLTRANSFERASE-RELATED 54 350 - -
Vra6g0146 350 Gene3D Hexapeptide repeat proteins 218 338 - -
Vra6g0146 350 SUPERFAMILY Trimeric LpxA-like enzymes 84 320 IPR011004 -
Vra6g0146 350 TIGRFAM cysE: serine O-acetyltransferase 156 317 IPR005881 GO:0005737|GO:0006535|GO:0009001
Vra6g0146 350 Gene3D serine acetyltransferase, domain 1 66 217 IPR042122 -
Vra6g0146 350 Pfam Bacterial transferase hexapeptide (six repeats) 268 302 IPR001451 -
Vra6g0146 350 PANTHER SERINE ACETYLTRANSFERASE 54 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0146 Vra-Chr6 1029076 1030442 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0146 84 346 Miscellaneous Gene Families AT2G17640 52.045 2.51e-89 269
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0146 K00640 - gmx:100820316 564.688
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0146 6 1029076 1030442 Vra6g0146 6 1029076 1030442 ECH
Vra10g0289 10 7440836 7442397 Vra6g0146 6 1029076 1030442 PCT