Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0289 ATGAATGTTCTGGTTCTAGGGCGCTTTTTCACTTCTCCATTATATAAGACTTCCCCTCTCACTCCCTCCCAAATCCAATTCTCACCCATTTTCCTTCCTCCCTTAAAGCTCCAACCTTTGCAGGCAATTCACCTCTTCTCTCTCCACATGGCCACTTGCGTGGACGCCCCGACCCCTCTTTCTCGCAAGCCAAACGCCTCCAATTCCGATGACCATTCTTTCAATTACGTCAAATTCTGCCGACCCACTTTCTCCGATCGTGTCCCCTGCTTACCCATTTGCAAGAATCGGGAGATGGCCTTCTCACGTGTGGAGGACTTGGACACACGTGTGGAGGGTGGTGTTGGTGTTCTTGAGTTCGAGGCTGTTGATCTTTGGTTGAAGATTCAGGAGGAGGCTAGGTCGGATGTGGATCAAGAACCTATTTTGTCTAGTTACTATTTCAGTTCCATTTTGTCCCACAAATCATTAGAGAGTGCCTTGGCCAACCAACTCTCTACCAATTTGAGCAGTTTGAGCCTTCCAAGCAGCACCCTCTTTGATCTTTTCTTGGGTGTTTTGGTTGACGATGGTGGAGATGACATCATAGGTGCTGTGAAGGATGATTTAGTTGCTGTTAAAGAGAGAGACCCTGCATGCATTAGTTATGTGCATTGTTTGTTAAATTTCAAAGGGTTTCTTGCATGTCAGGCTCACAGGATTGGTCACAAATTGTGGCTTCAAGGGAGGAGGGTTCTGGCCCTGTTGATTCAGAATAGGGTGTCTGAGGTTTATGCTGTGGATATTCATCCTGGTGCACAGATTGGACGTGGAATTTTGTTGGATCATGCTACTGGGCTTGTGGTGGGGGAGACTGCAACTATTGGCAATAATGTCTCAATTTTGCATAATGTGACTTTGGGAGGGACTGGTAAGTCAAGTGGCGATAGGCACCCTAAGATTGGTGATGGGGTATTGATAGGTGCAGGGACTTGTATTTTGGGAAATATTAAGATTGGTGATGGGGCTAAGATTGGTGCTGGTTCTGTGGTGTTGAAGGATGTTCCAGCAAGGACTACTGCTGTTGGGAACCCTGCTAGGTTGATTGGAGGGAAGGACAACCCTATTAAATTGGACAAGATGCCTAGTTTTACCATGGATCATACTTCATACATCTCTGAGTGGTCTGATTATGTTATTTAG 1182 0.4611 MNVLVLGRFFTSPLYKTSPLTPSQIQFSPIFLPPLKLQPLQAIHLFSLHMATCVDAPTPLSRKPNASNSDDHSFNYVKFCRPTFSDRVPCLPICKNREMAFSRVEDLDTRVEGGVGVLEFEAVDLWLKIQEEARSDVDQEPILSSYYFSSILSHKSLESALANQLSTNLSSLSLPSSTLFDLFLGVLVDDGGDDIIGAVKDDLVAVKERDPACISYVHCLLNFKGFLACQAHRIGHKLWLQGRRVLALLIQNRVSEVYAVDIHPGAQIGRGILLDHATGLVVGETATIGNNVSILHNVTLGGTGKSSGDRHPKIGDGVLIGAGTCILGNIKIGDGAKIGAGSVVLKDVPARTTAVGNPARLIGGKDNPIKLDKMPSFTMDHTSYISEWSDYVI* 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0289 393 SUPERFAMILY Trimeric LpxA-like enzymes 125 363 IPR011004 -
Vra10g0289 393 Gene3D serine acetyltransferase, domain 1 117 260 IPR042122 -
Vra10g0289 393 Pfam Serine acetyltransferase, N-terminal 125 231 IPR010493 GO:0005737|GO:0006535|GO:0009001
Vra10g0289 393 TIGRFAM cysE: serine O-acetyltransferase 199 360 IPR005881 GO:0005737|GO:0006535|GO:0009001
Vra10g0289 393 Gene3D Hexapeptide repeat proteins 261 382 - -
Vra10g0289 393 PANTHER SERINE ACETYLTRANSFERASE 50 393 - -
Vra10g0289 393 Pfam Bacterial transferase hexapeptide (six repeats) 311 345 IPR001451 -
Vra10g0289 393 PANTHER SERINE ACETYLTRANSFERASE 50 393 - -
Vra10g0289 393 CDD LbH_SAT 258 358 IPR045304 -
Vra10g0289 393 ProSitePatterns Hexapeptide-repeat containing-transferases signature. 320 348 IPR018357 GO:0016740
Vra10g0289 393 SMART SATase_N_2_a 125 231 IPR010493 GO:0005737|GO:0006535|GO:0009001
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0289 Vra-Chr10 7440836 7442397 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0289 125 381 Miscellaneous Gene Families AT2G17640 53.307 6.21e-88 267
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0289 K00640 - gmx:606507 611.298
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra10g0289 10 7440836 7442397 Vra6g0146 6 1029076 1030442 PCT