Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0129 CGTGATCACGACACTATCCTTCAAATAGTTTTGCATAAAAACGACTTGCATGGATCAAAGGATGAAGATGGCTGTATTTTGCCAACGTTAGTGTATATGGCTCGTGAGAAGAGACCTCAGTATCATAGTCACTATAAAGCCGGAGCTATAAATTCATTGCTAAGAGTGTCTTCAAGTATTAGCGATGGGAAAATCATTCTAATTCTAGATTGTGACATGTNCTCAACCCATTCTCAATCAGTGAGAGACGCTCTATGTTTCTTCATGGACGAAGATAAAGGCCCAGAAATTGCTTACGTGCAATTTCCGCAAAGTTTTGATAATATAGGAAAGAATGACCTCTACGGGAATTCTTTACTTGAAATTGTGGAGGTAGACCTCCCTGGCACGGATGGTTTTGGTGGCCCTATTTTCATTGGAACTTGTTGCTTTCTTAGAAGAGATGCTCTGTGTTGGAACAAGTTCAGTCGTGAATACAAAAATGAATGGAATGATGAGAATGAGAATGAGGTGACTGAAGTAAACTTGGATGAACTAGCAAAAAATTCAAAGGCTTTAGCAGATTGCACTTATGAAACAAATACTTTATGGGGGAAAAAGATTGGTTCAATATATGGGTGTCTTGTGGAGGACGTGGTAACAGGGCTATGGATACAGTCACAAGGATGGAAATCAGTATACTATAACCCATCAATAAGAGCTTTTTCTGGTATTGCTCCAACTAACTTACTTCGCTCACTAGTTCAACTAAGAAGATGGGGTGAAGGTCAATTGCAGATTTTGTTTTCTGAGTTCAGACCTAAATGTTATGGTCATAACAAGGTCAAGTTAGGCCTACAATGGGGATATTTGCATTATAACACCTTTGCAATCACTTCCTTATCAGTACTATATTATTCCATCATCCCTCCACTCTATCTCCTTAAGGGCATTTCCTTCTTTCCAAAGATGTGTAGCTTATGGTTTATACCTTTCGCATGTGTAATTGTTGGGGAAATTGCTTATAGTTTGATTGAGGGTTTGAGTAAGGGAGGATCAATCCAAGGTTGGTGCAATGGTATAAGAATGTGGTTGTACGTGAGATCAAGTTCCTTTCTATTTTCCTTATTAAGTTTCATCTTAGGATTCTTTGGACGTTCAAATNCATCATTTTTACTCACACCAAAGGTCACAGAAGATGATCTTGCTCAACGTTACGAGAAAGAGATCATGGAGTTTGGAACCTCTTCTCCTTATTTCACTGTTCTAGCAACAATTGCATTGCTCAATCTGTTTTGTTTGCTTTCAACTTTAAAGGATTTGNTCCTTGCCAAAAGTGCTTTTGCTGGAGAGAAAATGGCATTACAAGTTCTTCTGTGTGGATTTTTGGTTTTCATCAATTTTCCCATATACGAAGCCATTCTTATTAGGAAGGATAAGGGTAGAATGCCAACCNTTCTTTCTGTGAAGTCTACTATAATAGCTTTCACTGCATCTGTCTTCTTCAAACTATTCAATTGA 1500 0.3807 RDHDTILQIVLHKNDLHGSKDEDGCILPTLVYMAREKRPQYHSHYKAGAINSLLRVSSSISDGKIILILDCDMXSTHSQSVRDALCFFMDEDKGPEIAYVQFPQSFDNIGKNDLYGNSLLEIVEVDLPGTDGFGGPIFIGTCCFLRRDALCWNKFSREYKNEWNDENENEVTEVNLDELAKNSKALADCTYETNTLWGKKIGSIYGCLVEDVVTGLWIQSQGWKSVYYNPSIRAFSGIAPTNLLRSLVQLRRWGEGQLQILFSEFRPKCYGHNKVKLGLQWGYLHYNTFAITSLSVLYYSIIPPLYLLKGISFFPKMCSLWFIPFACVIVGEIAYSLIEGLSKGGSIQGWCNGIRMWLYVRSSSFLFSLLSFILGFFGRSNXSFLLTPKVTEDDLAQRYEKEIMEFGTSSPYFTVLATIALLNLFCLLSTLKDLXLAKSAFAGEKMALQVLLCGFLVFINFPIYEAILIRKDKGRMPTXLSVKSTIIAFTASVFFKLFN* 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0129 499 SUPERFAMILY Nucleotide-diphospho-sugar transferases 43 323 IPR029044 -
Vra6g0129 499 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 1 492 - -
Vra6g0129 499 PANTHER CELLULOSE SYNTHASE-LIKE PROTEIN E1 1 492 - -
Vra6g0129 499 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 19 240 IPR029044 -
Vra6g0129 499 Pfam Cellulose synthase 1 152 IPR005150 GO:0016020|GO:0016760|GO:0030244
Vra6g0129 499 Pfam Cellulose synthase 178 495 IPR005150 GO:0016020|GO:0016760|GO:0030244
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0129 Vra-Chr6 921685 924285 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0129 1 491 Glycosyltransferase AT1G55850 49.898 9.99e-155 456
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0129 - - pvu:PHAVU_L008300g 786.563
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0129 6 921685 924285 Vra6g0129 6 921685 924285 ECH
Vra6g0127 6 907291 912702 Vra6g0129 6 921685 924285 PCT
Vra6g0129 6 921685 924285 Vra6g0129 6 921685 924285 PCT