Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0127 ATGAGAGAAGATGAAGCCCGTGTTCGTTTGTTTGAGACAAAGGAAGCAAGATTCCGAGGGTTGTACAAGGTATTCGCAGCAACAATATTTAGTGCTATTTGTTTGATCTGGGTTTACAGAGTGATGAACATGGACAGAATCGAAAGAGGACGATGGTGTTGGATGAGTGTTATGGTGTCGGAGTTTGGTTTTGGATTCTACTGGATCATCACACAGTCTGTTCGATGGAGAATACTCTACCAGACACCTTTCAAACACACCCTCTTAAACAGATATGATGAGGAGAATTTACCAGCAGTGGACATTTTTGTATGCACTGCTGATCCAAAACTGGAACCTCCATGCATGGTGATGAACACAGTGTTATCAGCAATGGCATACAATTATCCAGCAAATAAATTGAACGTATATCTCTCTGACGATGGAGGCTCTGAGCTAACATTCTATGCTCTCCTAAAGGCCTCCATATTCTCTAAACATTGGTTACCCTTTTGTAGAAGATTCAATGTTGAGCCTAGGTCGCCAGAAGTCTTCTTTGCTCAACTCCAAAATTCAAGCACTAGCACTGAGTATCAGAAAGCATATTTACATATCAAGAAATTGTACGAGGAAATGAAAAGTGAGATTGAATCAGCCGCAGTAAAGGGAGAGCTTCCAGAGAATGTGAAGAATGAGCACAGGGGATTCTCAGAATGGAACCCAAAAACGACAAAGCAGAATCACCAGTCTATTGTGCAGATTATAGTGGATGGAAGAGATAGAAATAGTGTAGATGAAGATGGATTTGAACTTCCAACAGTAGTATACATGGCACGAGAGAAACGANCCAACCATCCTCATCACTTCAAAGCTGGTGCTGTTAATGCACTGATAAGAGTATCATCCGAAATAAGCAATGCTCCTTTCATCCTCAACTTGGACTGTGACATGTACTCCAATAATGCAGATACAATTCAAGAAATACTATGTTTTTTCCTCGACGAAACAAAAGGACAAGATATAGCATATGTACAATTTCCCCAAAGTTTCAGTAACATCACCAAAAATGACCAGTATGGAAATTCTTATCTTGTAAGCGCTAAGTATGAGTTAGCTGGCATATGCGGATATGGAGCAGCCTTGTTCTGTGGAACAGGATGCTTACATAGAAGAGAAAGTCTTTCCGGATCTCACTTGAAAGATTACAAAGTAAATTTGGAGAAGAAGCCTAAAAGAAACAACAACAGAACAATTGATGAACTGAATGAAGCATCGAAGGCTCTTGCCACTTGTACATATGAAGAGGGCACCCAATGGGGGAAGGAGATGGGATTAGTATATGGTATTCCTGTAGAAGACGTTGCAACTGGCCTTGTAATCTCGTGTAGGGGTTGGAAATCTATTTATTACAACCCAGAAAGAAAGGCATTTGTGGGAATAGCTCCAACAACCTTGGATGTAGCATGTCTTCAGCATATGAGGTGGTCAGAAGGCCTGTTTCAAGTTTTCTTCTCCAAGTATTGCCCTTTCATTTATGGGCATGGAAAGATACACTTGGGTGTTCAAATGGGATATTGCAATTACCTCTTGTGGGCTCCTATGTCCCTTCCCACTCTTTGTTATGCCATTGTTCTTCCCATCTCCTTGTTTCATGGCATTCCATTGTTCCCAAAGCTTTCAAGCATGTGGGTCATTCCATTTGTGTATGCATTTCTTGCTACCTATGGCTATAGCTTGTGTGAGTATTTGTCTTGTGGATCCACAATAAAGGCATGGTGGAATTTGCAGAGAATAAAGTTCATCCACAGAGTCACCTCTTATCTCTTTGGTTTCATCAATACCATGACAAAGCAACTAGGATTGTCACATACAAACTTTGTGATCACAGATAAAGTAGTAACTGAGGATGTTCAAACTAGATACGAACAAGGAATCATTGAGTTTGGAGGCTCCTCAATCATGTTGACCATCTTAGGAACAGTGGTTTTGCTGAACCTTTTTGGTCTGGTCGGAGGAATCGTGAGAATTCTAATGGAATTGAAATTGAGCTGGAACCAATTGATGATGCAGATTACAGTGAGTTTCTTGGTGGTAATGATCAATTTACCTGTATATGAAGCACTTTTCATTCGTACTGATAAAGGCTGCATATCATCCTCGATTATGCTGAAGTCCATTGTTGTGGCTTCTTTAGCATTTTACCTTGGAGCTTTCATTTCCTAG 2202 0.4046 MREDEARVRLFETKEARFRGLYKVFAATIFSAICLIWVYRVMNMDRIERGRWCWMSVMVSEFGFGFYWIITQSVRWRILYQTPFKHTLLNRYDEENLPAVDIFVCTADPKLEPPCMVMNTVLSAMAYNYPANKLNVYLSDDGGSELTFYALLKASIFSKHWLPFCRRFNVEPRSPEVFFAQLQNSSTSTEYQKAYLHIKKLYEEMKSEIESAAVKGELPENVKNEHRGFSEWNPKTTKQNHQSIVQIIVDGRDRNSVDEDGFELPTVVYMAREKRXNHPHHFKAGAVNALIRVSSEISNAPFILNLDCDMYSNNADTIQEILCFFLDETKGQDIAYVQFPQSFSNITKNDQYGNSYLVSAKYELAGICGYGAALFCGTGCLHRRESLSGSHLKDYKVNLEKKPKRNNNRTIDELNEASKALATCTYEEGTQWGKEMGLVYGIPVEDVATGLVISCRGWKSIYYNPERKAFVGIAPTTLDVACLQHMRWSEGLFQVFFSKYCPFIYGHGKIHLGVQMGYCNYLLWAPMSLPTLCYAIVLPISLFHGIPLFPKLSSMWVIPFVYAFLATYGYSLCEYLSCGSTIKAWWNLQRIKFIHRVTSYLFGFINTMTKQLGLSHTNFVITDKVVTEDVQTRYEQGIIEFGGSSIMLTILGTVVLLNLFGLVGGIVRILMELKLSWNQLMMQITVSFLVVMINLPVYEALFIRTDKGCISSSIMLKSIVVASLAFYLGAFIS* 734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0127 733 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 89 184 IPR029044 -
Vra6g0127 733 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 234 393 IPR029044 -
Vra6g0127 733 Pfam Cellulose synthase 100 394 IPR005150 GO:0016020|GO:0016760|GO:0030244
Vra6g0127 733 Pfam Cellulose synthase 409 724 IPR005150 GO:0016020|GO:0016760|GO:0030244
Vra6g0127 733 PANTHER CELLULOSE SYNTHASE-LIKE PROTEIN CSLE 6 726 - -
Vra6g0127 733 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 6 726 - -
Vra6g0127 733 SUPERFAMILY Nucleotide-diphospho-sugar transferases 115 498 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0127 Vra-Chr6 907291 912702 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0127 10 732 Glycosyltransferase AT1G55850 47.730 0.0 687
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0127 - - gmx:100779861 1253.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0127 6 907291 912702 Vra6g0127 6 907291 912702 ECH
Vra6g0127 6 907291 912702 Vra6g0129 6 921685 924285 PCT