Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0124 ATGTGTATTACTAATCAGGAAGTTATCAAGCAGTTGGAGTCCCTTTTGGAAAACTTGGATGAGCAACAGAAGAACACATTCCAGAATATGCACCAGGGCTATCCAACAGAAACATTAGTGCGGTTTCTCAAAGCAAGGGACGGGAATGTTGTGAAAGCACATAAAATGTTGATTGATTGTTTACAATGGAGAGTAGAAAATGAGATTGACAATGTTTTAGCGAAGCCTATACCACCTGGTTTATACAGACGTTTGCGAGATTCTCAACTTATGGGAATGTCTGGTTTCACAAAGGAGGGCTTACCTGTCATTGCTATTGGTGTTGGGCTCAGCACATTTGATGAATCGTTTGACAAATACTATATACAGTCGCACATCCAAATGAATGAATATAGGGATCGAGTGATCATGGTGAGTACCTACACTAGAGTTTTTTTAGGTGTAAATTCTGACTCCCTAGTTGTTTATTTGGAATATTTATTGCAGCCAAGAGCTACAAAGAATCATGGAAGACACATTGATACTTGTGTGAAAGTCTTGGATATGACTGGTTTAAAACTCTCAGCACTGAACCAATTGAAGCTTTTGACAGCTATAACAACAATAGATGACTTGAACTATCCAGAAAAGACTGACGCATATTACATAGTTAACGTTCCATATGTATTCTCAGCGTGTTGGAAGGTTGTAAGGCCTCTTTTGCAGGAAAGAACAAGGAAGAAAGTCCATGTCCTCAAAGGTTGTGGCACGGAGGAATTACTCAAGGTAATGGACTATGCATCCCTCCCACATTTTTGCAGAAAGGAGGGTTCCAGGGTGCCCCAACATCATGAAGCTGGAAATACTGAAAATTGTTTCTTCATTGATCATGTCTTCCATAAACAACTATATAATTACATCGAGCAGCAAGCTATATTCATAGAGTCCATATCTCAGGATTCTTTCCATGTAGATTTACCTGAGCCAGACCCAGTTGATGCCAAAATTGCCAAGACTATAGAAACTGAGTTCCATAAACTGGAAATTCAGAATGGCCTTACCAATTGA 1047 0.3935 MCITNQEVIKQLESLLENLDEQQKNTFQNMHQGYPTETLVRFLKARDGNVVKAHKMLIDCLQWRVENEIDNVLAKPIPPGLYRRLRDSQLMGMSGFTKEGLPVIAIGVGLSTFDESFDKYYIQSHIQMNEYRDRVIMVSTYTRVFLGVNSDSLVVYLEYLLQPRATKNHGRHIDTCVKVLDMTGLKLSALNQLKLLTAITTIDDLNYPEKTDAYYIVNVPYVFSACWKVVRPLLQERTRKKVHVLKGCGTEELLKVMDYASLPHFCRKEGSRVPQHHEAGNTENCFFIDHVFHKQLYNYIEQQAIFIESISQDSFHVDLPEPDPVDAKIAKTIETEFHKLEIQNGLTN* 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0124 348 Coils Coil 2 29 - -
Vra6g0124 348 CDD SEC14 90 265 IPR001251 -
Vra6g0124 348 PANTHER OS09G0258000 PROTEIN 1 140 - -
Vra6g0124 348 PANTHER OS09G0258000 PROTEIN 159 348 - -
Vra6g0124 348 SMART CRAL_TRIO_N_2 35 60 IPR011074 -
Vra6g0124 348 PANTHER - 1 140 - -
Vra6g0124 348 PANTHER - 159 348 - -
Vra6g0124 348 Gene3D - 4 286 IPR036865 -
Vra6g0124 348 SUPERFAMILY CRAL/TRIO N-terminal domain 14 75 IPR036273 -
Vra6g0124 348 Pfam CRAL/TRIO domain 90 265 IPR001251 -
Vra6g0124 348 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 78 263 IPR001251 -
Vra6g0124 348 SMART sec14_4 113 271 IPR001251 -
Vra6g0124 348 SUPERFAMILY CRAL/TRIO domain 82 266 IPR036865 -
Vra6g0124 348 Pfam CRAL/TRIO, N-terminal domain 10 59 IPR011074 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0124 Vra-Chr6 890125 894512 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0124 29 340 Acyl Lipid Metabolism Gene Families AT1G55840 61.076 1.10e-143 406
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0124 - - vra:106764338 702.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0124 6 890125 894512 Vra6g0124 6 890125 894512 ECH
Vra10g0302 10 7584155 7589748 Vra6g0124 6 890125 894512 PCT