Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0302 ATGGGTGGTGGAAATCAAGAGGCTGTCAAGCAGTTGCAGTCCCTCATGGAAAATGTGGATGAGCAGCTGAAGAACACATTTCAGAACATGCACCAAGGTTATCCAGCTGAAACATTAATACGGTTTCTCAAAGCAAGGGATTGGCATGTTGCCAAAGCTCATAAAATGTTAAGTGATTGTTTGAACTGGAGAGTGGAAAATGAGATTGACAAAGTTTTAACGAAGCCTATTCCTTCGGATTTGTATAGAGCCATACGGGATTCTCAACTCATAGGAATGTCTGGTTACTCTAAGGAGGGTCTACCGGTCATTGCTGTTGGTGTTGGACTCAGTACATATGATAAAGCTTCTGACAAATACTATATACAATCACACATTCAAATCAATGAATTTAGGGATCGAGTGATCTTGTTGTTGACTGCTATATCCACAATAGATGACTTGAACTACCCGGAAAAGACGGACACATACTATATTGTTAATGCACCATATGTATTCTCTGCATGTTGGAAGGTTGTAAAGCCTCTTTTGCAAGAAAGAACAAGGAGGAAAATACAGGTGCTTCAAGGTTGCGGGAAGGAGGAATTACTGAAGGTAATGGACTATGCATCCCTCCCACACTTCTGCAGAAAAGAAGATTCGAAGTCATCCAAACATAATGCATCAGGAAACATTGAAAATTGTTTCTCCTTCAATCATGTTTTCCACCAACAACTCTACAATCACATCAAGCATCAAGCTATCATTATGGAGTCAATCTCACCAATCAGACAAGGGTCCTTCTATGTGGACATTCCAGAGCCAGACCCGGATGATGCCAAAATAGCCAAAACCATAGAAACTGAGTTCCACAAATTAGAGAATCAGAAAAATGGCTTCATCAATTCACGAAATGGCGTTACAGTCAATGGCCATCGAAATACAAGCTACTAA 933 0.4041 MGGGNQEAVKQLQSLMENVDEQLKNTFQNMHQGYPAETLIRFLKARDWHVAKAHKMLSDCLNWRVENEIDKVLTKPIPSDLYRAIRDSQLIGMSGYSKEGLPVIAVGVGLSTYDKASDKYYIQSHIQINEFRDRVILLLTAISTIDDLNYPEKTDTYYIVNAPYVFSACWKVVKPLLQERTRRKIQVLQGCGKEELLKVMDYASLPHFCRKEDSKSSKHNASGNIENCFSFNHVFHQQLYNHIKHQAIIMESISPIRQGSFYVDIPEPDPDDAKIAKTIETEFHKLENQKNGFINSRNGVTVNGHRNTSY* 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0302 310 PANTHER - 137 304 - -
Vra10g0302 310 PANTHER - 1 137 - -
Vra10g0302 310 SMART sec14_4 85 214 IPR001251 -
Vra10g0302 310 CDD SEC14 82 208 IPR001251 -
Vra10g0302 310 PANTHER OS09G0258000 PROTEIN 137 304 - -
Vra10g0302 310 PANTHER OS09G0258000 PROTEIN 1 137 - -
Vra10g0302 310 SUPERFAMILY CRAL/TRIO N-terminal domain 18 75 IPR036273 -
Vra10g0302 310 Coils Coil 5 29 - -
Vra10g0302 310 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 97 217 IPR001251 -
Vra10g0302 310 Gene3D - 4 133 IPR036865 -
Vra10g0302 310 Pfam CRAL/TRIO domain 126 208 IPR001251 -
Vra10g0302 310 Pfam CRAL/TRIO, N-terminal domain 9 59 IPR011074 -
Vra10g0302 310 SUPERFAMILY CRAL/TRIO domain 80 208 IPR036865 -
Vra10g0302 310 Gene3D - 134 231 IPR036865 -
Vra10g0302 310 SMART CRAL_TRIO_N_2 35 60 IPR011074 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0302 Vra-Chr10 7584155 7589748 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0302 1 303 Acyl Lipid Metabolism Gene Families AT5G47730 58.036 1.84e-137 391
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0302 - - gmx:100817955 555.058
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra10g0302 10 7584155 7589748 Vra6g0124 6 890125 894512 PCT