Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0101 ATGGAGAATGAGGCATATAGCATGTCATCTGATATAGAAATAGGTGTGAATGAGAAGATGGTTGAGGCACTTGAGTCAAGTGACAACATCCCACTGTTGCTCACCAATTCTAGCTCTCTCAAAAGGACAGGGACGGTGTGGACAGCAGTGGCACACATAGTGACTGGGGTGATAGGATCGGGAGTGCTGTCTCTGCCGTGGAGCACTGCACAGCTTGGTTGGTTAGCAGGACCACTCTCAGTTATTCTCATAGCTTCCATCACTCTGTTCTCTTCTCTTCTTCTATGCAACACTTATCGCCATCCCCATCCTGAACATGGTCCGAATAGGAGTGCCTCCTACCTTGATGTTGTCCATCTGCATTTAGGAATAAGTAATGGGCGGCTCAGTGGCCTTCTTGTGAATATAAGTTTGTATGGTTTTGCAATTGCCTTCGTCATTACAACAGCTATCAGCTTAAGAACAATCCAACATTCATTTTGTTACCACAACAAAGGGAGTGAAGCATCATGTGAATTTGCAGATGCATATTACATGCTGCTTTTTGGCGTTATCCAAATTATTCTCTCACAGATACCCAACTTCCATAACATCAAATGGTTGTCGGTTGTTGCTGCAATTATGTCCTTTACTTATTCTTTCATAGGAATGGGGCTTTCTATTGCACAAATCATAGAGAAAGGACATGCTGAGGGTAGCATTGGAGGAATCAGTACCTCCAGTGGAACTGAAAAGTTATGGCTGGTTTCTCAAGCACTTGGTGACATATCATTCTCATTTCCCTTCTCAACAATTATTATGGAAATACAGGATACTTTGAAATCACCTCCACCTGAAAACCAAACCATGAAGAAGGCCTCAGTAATTGCGGTCACTGTCACAACATTTATGTACCTCAGTTGTGGAGGTGCTGGATATGCTGCCTTTGGTGATAATACACCAGGAAACCTTTTAACAGGGTTTGAATCCTCTTACTGGCTTGTGAGCTTTGCTAACCTCTGTATAGTGGTTCACCTAGTTGGTTCATATCAGGTGTATTGCCAGCCACTTTTTGCCACTGTTGAGAGCTGGTTCCGTTTTAATTTCCCGGATAGTGAATTTATCAATCACACATATATCTTGAAACTCCCGTTGCTACCAGCCTTCGAACTAAATTTTCTCAGCCTGTCTTTCAGAACTGCTTATGTTGCATCAACAGTTGTGATTGCAATGGTCTTTCCCTACTTCAACCAGATTTTGGGGGTTCTGGGTAGCATGATTTTTTGGCCATTGACCATATATTTTCCTGTGGAAATATATTTGAATCAATCCTCTACCGTAGCATGGACGACTAAGTGGGTCCTGCTTCGAACTTTCAGCATTTTTGGCTTTGTTTTTGGATTGTTCACTCTCACTGGATGTATTAAAGGAATAGTAGCTCAAAAAATTGGCTGA 1434 0.4226 MENEAYSMSSDIEIGVNEKMVEALESSDNIPLLLTNSSSLKRTGTVWTAVAHIVTGVIGSGVLSLPWSTAQLGWLAGPLSVILIASITLFSSLLLCNTYRHPHPEHGPNRSASYLDVVHLHLGISNGRLSGLLVNISLYGFAIAFVITTAISLRTIQHSFCYHNKGSEASCEFADAYYMLLFGVIQIILSQIPNFHNIKWLSVVAAIMSFTYSFIGMGLSIAQIIEKGHAEGSIGGISTSSGTEKLWLVSQALGDISFSFPFSTIIMEIQDTLKSPPPENQTMKKASVIAVTVTTFMYLSCGGAGYAAFGDNTPGNLLTGFESSYWLVSFANLCIVVHLVGSYQVYCQPLFATVESWFRFNFPDSEFINHTYILKLPLLPAFELNFLSLSFRTAYVASTVVIAMVFPYFNQILGVLGSMIFWPLTIYFPVEIYLNQSSTVAWTTKWVLLRTFSIFGFVFGLFTLTGCIKGIVAQKIG* 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0101 477 PANTHER OS05G0424000 PROTEIN-RELATED 25 475 - -
Vra6g0101 477 Pfam Transmembrane amino acid transporter protein 42 470 IPR013057 -
Vra6g0101 477 PANTHER AMINO ACID TRANSPORTER, TRANSMEMBRANE DOMAIN-CONTAINING PROTEIN-RELATED 25 475 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0101 Vra-Chr6 721856 725480 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0101 34 454 Organic Solute Cotransporters AT1G77380 49.647 9.79e-151 436
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0101 K24917 - gmx:100788056 823.542
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0101 6 721856 725480 Vra6g0101 6 721856 725480 ECH
Vra10g0336 10 8131287 8135244 Vra6g0101 6 721856 725480 PCT