Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0336 ATGCAAGATCGAGAAGGTTCAGCAACTGACAGCTCCCCATTGTTGGAAACTCAGTATGCAAACGATCATCATGTTGAAAGAACTGGAACAGTGTGGACTGCAGTGGCACACATAGTGACAGGAGTGATAGGGTCAGGAGTGTTGTCATTGGCATGGAGCATTGCACAGCTTGGTTGGATTGGAGGGCCTCTCACAATCATTTTCTTTGCCTGCATCACTCTTCTTTCTTCTTTCCTTCTCAGCAACACCTACCGTGGTCCAGACCCTGAACTTGGCCCTCATAGGAGCTCCTCATACCTTGATGCTGTTAACCTCCATAAGGGAGAAGGGAATAGCCGTTTCTGTGGTGTTTTTGTGAACGTGAGCTTATATGGTTTTGGAATTGCTTATGTCATTACTGCTGCTATCAGTATGAGAGCAATCCAAATATCAAACTGTTCCTATGGCAACGAGGATGAAGGAAAATGTGGATTTGATGGTGCATATTTGATGCTTATTTTTGGGGCTATCCAAGTTGTTCTCTCTCAGACGCCCAACTTCCACAATATTCAGTGGTTGTCAATTGTAGCAGCAATTACATCCTTTTTTTATGCTTTCGTAGGAATGTGGCTTTCTGCTGGAAAAATCACGGAAAATGGACATGCTGAGGGTACTATTAGTGGAATCCCTACTTCTAGTGGAGTTGATAAAGTATGGCTGGTTGCTCAAGCGCTTGGTGACATAGCATTCTCGTATCCATTCTCTGTAATTCTTATAGAAATACAGGATACTTTGAGGTCGCCTCCACCAGAACACATAACGATGAAGAGGGCGTCAACAATATCTGTGATTATCACAACATTTTTCTACCTGTGTTGTGGGTGTTTAGGATATGCAGCCTTTGGTAATGAAACACCAGGAAACCTTTTAACAGGGTTTACATCTAATGCACAGCATTGGCTTGTAGACTTTGCGAATGCTTGTATAGTGATTCACCTGGTTGGTGCATATCAGGTGTATAGCCAGCCACTTTTTGCCAATGTTGAGAATTGGCTCCGTTTCAAGTTCCCAGACAGTGAATTTGTGAATCACGTATACTTGTTGAAACTCCCATTGCTGCCAGCTTTCCAACTAAGTTTTCTGAGGCTTTCTTTCAGAACTGCATATGTTGCATCAACAACTGTGATTGCAATGCTCTTTCCCTACTTCAATCAGATTTTGGGAGTTTTGGCCGGAATAATCTATTATCCATTGTCCATATATTTTCCGGTGGAAATGTACTTGAGTCTGAGCAATATTGAGCCATGGACGTCAAAGTGGATCATGCTCAGGGGTTTTAGCACCGTTGGCTTTGTGGTGGGATTGTTCACTCTCGTTGGATCCATTGAAGGGATAGTATCTGCAAAACTAAAATGA 1395 0.428 MQDREGSATDSSPLLETQYANDHHVERTGTVWTAVAHIVTGVIGSGVLSLAWSIAQLGWIGGPLTIIFFACITLLSSFLLSNTYRGPDPELGPHRSSSYLDAVNLHKGEGNSRFCGVFVNVSLYGFGIAYVITAAISMRAIQISNCSYGNEDEGKCGFDGAYLMLIFGAIQVVLSQTPNFHNIQWLSIVAAITSFFYAFVGMWLSAGKITENGHAEGTISGIPTSSGVDKVWLVAQALGDIAFSYPFSVILIEIQDTLRSPPPEHITMKRASTISVIITTFFYLCCGCLGYAAFGNETPGNLLTGFTSNAQHWLVDFANACIVIHLVGAYQVYSQPLFANVENWLRFKFPDSEFVNHVYLLKLPLLPAFQLSFLRLSFRTAYVASTTVIAMLFPYFNQILGVLAGIIYYPLSIYFPVEMYLSLSNIEPWTSKWIMLRGFSTVGFVVGLFTLVGSIEGIVSAKLK* 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0336 464 PANTHER AMINO ACID TRANSPORTER, TRANSMEMBRANE DOMAIN-CONTAINING PROTEIN-RELATED 12 463 - -
Vra10g0336 464 PANTHER OS05G0424000 PROTEIN-RELATED 12 463 - -
Vra10g0336 464 Pfam Transmembrane amino acid transporter protein 27 458 IPR013057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0336 Vra-Chr10 8131287 8135244 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0336 19 459 Organic Solute Cotransporters AT5G09220 45.946 4.08e-146 425
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0336 K24917 - gmx:100801302 794.653
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra10g0336 10 8131287 8135244 Vra6g0101 6 721856 725480 PCT