Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2759 ATGACTACTCTGGATTCTCAAGTGACTATGGTTCCGGCTGGTGAACCCTCCAGCAGCACCTGTCCTTCTTCATCCAGCAAGAAGCCCAAGCGATTCGAGATCAAGAAGTGGAATGCCGTTGCTCTATGGGTATGGGATATCATTGTGGACAATTGTGCTATCTGCAGGAACCATATCATGGATCTCTGTATTGAGTGCCAGGCCAACCATGCTAGCGTCACTAGCGAGGAATGCACTGTAGCTTGGGGAGCTTGTAACCATGCTTTTCACTTCCATTGCATAAGCAGATGGCTCAAGACTCGACAAGTATGTCCCCTAGATAATAGCAAGTGGGAGTTTCAGAAATATGGTCACTAG 357 0.4762 MTTLDSQVTMVPAGEPSSSTCPSSSSKKPKRFEIKKWNAVALWVWDIIVDNCAICRNHIMDLCIECQANHASVTSEECTVAWGACNHAFHFHCISRWLKTRQVCPLDNSKWEFQKYGH* 119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2759 118 SUPERFAMILY RING/U-box 30 115 - -
Vra5g2759 118 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RBX1 1 118 - -
Vra5g2759 118 CDD mRING-H2-C3H2C2D_RBX1 50 111 - -
Vra5g2759 118 Pfam RING-H2 zinc finger domain 50 108 IPR024766 GO:0008270
Vra5g2759 118 MobiDBLite consensus disorder prediction 1 27 - -
Vra5g2759 118 PANTHER RING BOX 1 118 - -
Vra5g2759 118 MobiDBLite consensus disorder prediction 1 28 - -
Vra5g2759 118 ProSiteProfiles Zinc finger RING-type profile. 52 108 IPR001841 -
Vra5g2759 118 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 18 118 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2759 Vra-Chr5 34812244 34813793 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2759 K03868 - gmx:100526919 235.343
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g2759 5 34812244 34813793 Vra2g0962 2 9809319 9812252 PCT