Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0962 ATGGCGACTCTTGATTCCGACGTGCCAATGATTCCGGCCGGCGAGGCATCGAGCAGTGCCGGACCGTCTTCCAAGAAACCCAAGCGCTTCGAGATCAAAAAATGGAACGCGGTCGCACTCTGGGCTTGGGACATCGTTGTCGATAACTGTGCCATCTGCCGGAACCACATCATGGATCTATGCATCGAGTGCCAAGCCAACCAGGCCAGCGCAACTAGCGAAGAATGCACTGTGGCGTGGGGGGTTTGTAACCATGCCTTCCACTTCCACTGCATTAGTCGATGGCTCAAGACTCGTCAAGTTTGTCCTCTAGATAACAGTGAGTGGGAGTTTCAGAAATACGGCCACTAG 351 0.5385 MATLDSDVPMIPAGEASSSAGPSSKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH* 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0962 116 Pfam RING-H2 zinc finger domain 48 106 IPR024766 GO:0008270
Vra2g0962 116 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RBX1 1 116 - -
Vra2g0962 116 CDD mRING-H2-C3H2C2D_RBX1 48 109 - -
Vra2g0962 116 SUPERFAMILY RING/U-box 28 113 - -
Vra2g0962 116 ProSiteProfiles Zinc finger RING-type profile. 61 106 IPR001841 -
Vra2g0962 116 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 17 116 IPR013083 -
Vra2g0962 116 PANTHER RING BOX 1 116 - -
Vra2g0962 116 MobiDBLite consensus disorder prediction 1 28 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0962 Vra-Chr2 9809319 9812252 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0962 K03868 - gmx:100789570 250.751
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g2759 5 34812244 34813793 Vra2g0962 2 9809319 9812252 PCT